Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01415 ATGAACCCAACCAAACATAGCACTTCACCCTTTGATTTGAAGAGACTAGCTGTCTCTGGCACTGGCAGCAGAAGCAGAAAAGTTCCAGAAATTCTGGTAGGGAACGAGGAAAAGGAACGCAGCGTTTCGTTTCGTGTCGCCGTCATGGATGAAATGTACGGAGTGCCGGAGTACGCCGACAAGCCCCTCATGACTCCGGAGAATCTGATTTTCCCTCCGGACTACCCGGCCTTTCTCACAGCCGCCCGGATTCCCATCTTTGGATCCGATGACCTCTTCTCCGGCGAGCCTTCCGCCGCCTCCGCCTCTCCAGCTGGAATTCCGCGTCACCAGGACGATGACGTCGCAACCACCGTCATGAAGGCCAAAATCGCCTCCCACCCTCACTACCCTCGCCTCCTCCAAGCTTACATCGATTGCCAGAAGGTTGGGGCGCCTCCGGAAATCGCGCGTCTGTTGGAGGAAATCCGGCGAGAAAACGACCTGTGCAAGAGCGACGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAAACCTACTGCGACATGCTCGTGAAGTATAAATCCGACTTGGCTCGCCCCTTCGACGAAGCAACCACTTTCCTCAACAAGATTGAAATGCAGCTCAGCCATCTCTGCACTGGGGCTTCTGTTTCCACCGTTTCTGATGATGGGGGGGTGTCTTCGGACGAAGATTTGAGTACAGGAGATGGTGATGGTCAAGATGGGCAATCAAAGGGTGAAGATCGTGAACTGAAGGATAGACTTTTACGTAAGTATGGGAGTCACATTGGTACTTTGAAACTAGAGTTTTCAAAAAAGAAAAAGAAAGGTAAACTTCCGAAGGAAGCAAGACAAACATTGCTCCAGTGGTGGAATGTTCACTATAAATGGCCTTACCCTACGGAAGCTGATAAGATTGAACTGGCTAAGTCTACAGGGTTAGATCAAAAGCAAATTAACAATTGGTTTATTAACCAAAGAAAACGTCATTGGAAACCATCCGAGAATATGCAGTTTTCCATGATGGAAAATCTTAACGGACGGTTCCTTGGAGAGGAATGA 1080 0.4972 MNPTKHSTSPFDLKRLAVSGTGSRSRKVPEILVGNEEKERSVSFRVAVMDEMYGVPEYADKPLMTPENLIFPPDYPAFLTAARIPIFGSDDLFSGEPSAASASPAGIPRHQDDDVATTVMKAKIASHPHYPRLLQAYIDCQKVGAPPEIARLLEEIRRENDLCKSDVVSTCFGADPELDEFMETYCDMLVKYKSDLARPFDEATTFLNKIEMQLSHLCTGASVSTVSDDGGVSSDEDLSTGDGDGQDGQSKGEDRELKDRLLRKYGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLNGRFLGEE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01415 359 SMART KNOX1_2 118 162 IPR005540 GO:0003677|GO:0005634
Phco4g01415 359 Gene3D - 275 349 - -
Phco4g01415 359 MobiDBLite consensus disorder prediction 227 256 - -
Phco4g01415 359 Pfam KNOX2 domain 172 218 IPR005541 GO:0003677|GO:0005634
Phco4g01415 359 ProSitePatterns 'Homeobox' domain signature. 314 337 IPR017970 GO:0000981|GO:0006355
Phco4g01415 359 Pfam Homeobox KN domain 296 335 IPR008422 GO:0003677|GO:0006355
Phco4g01415 359 SMART KNOX2_2 168 219 IPR005541 GO:0003677|GO:0005634
Phco4g01415 359 SMART HOX_1 278 343 IPR001356 GO:0003677
Phco4g01415 359 Pfam ELK domain 256 277 IPR005539 GO:0003677
Phco4g01415 359 CDD homeodomain 288 340 IPR001356 GO:0003677
Phco4g01415 359 ProSiteProfiles ELK domain profile. 256 276 IPR005539 GO:0003677
Phco4g01415 359 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 103 346 - -
Phco4g01415 359 ProSiteProfiles 'Homeobox' domain profile. 276 339 IPR001356 GO:0003677
Phco4g01415 359 SMART ELK_2 256 277 IPR005539 GO:0003677
Phco4g01415 359 SUPERFAMILY Homeodomain-like 277 348 IPR009057 -
Phco4g01415 359 Pfam KNOX1 domain 120 161 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01415 Phco-Chr4 12338286 12346761 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phco4g01415 KNOX2 3.8e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01415 4 12338286 12346761 Phco4g01415 4 12338286 12346761 ECH
Phco4g01415 4 12338286 12346761 Phco8g02735 8 40316700 40324914 PCT