Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01413 ATGGCAAAAAATACCGACTTGAGATTCTCCCCTCTTCCGTTCACACTTTCTAGTGAAGAGCCCACCAGAGAAATTTATTTTGATTGGATTGTTCTAAAAATGAAGAAAATAGTCTCTCTCGTCTCTTTATGCAACCTTTCACTTCTCATCAAATTACTACTGCTATCAAAGACTGTTGTAGCAGAACCAAGGGCCAAACCCGTCCTAGTAACATGCGGCCATGTGCCAGAGCACAATACTACTATCTTTGTTCCCAATTTTGTTGCAACTATGGATAAGATCAGCGATGAGATGCGCAAAACTGGCTTTGGCACAGCAGTTGTAGGGACAGGACCTGATACTAACTATGGCCTGGCCCAGTGTTATGGAGATCTTTCATTGCTTGACTGTGTATTGTGCTATGCTGAGGCACGCACGGTTCTTCCCCAGTGCTACCCTAATAATTCTGGTCGCATTTTCCTTGATGGTTGCTTCATGAGGGCTGAGAATTATAGTTTCTTTAATGAGTATAAAGGACCAGGAGACAAAGCTGTATGTGGGAACATGACCAAGAAGGATTCAAGTTTTCAAGCAGCAGCAAAGCAAGCAGTTTCAAGAGCAGTTCTAGATGCACCCAATAACAAAGGATATGCTAGAGGGAATGTTGCAGTGGAAGGAGCAACTAACCAATCTGTTTATGTTCTGGCTGATTGTTGGAGGACTTTGGACAAAAGGTCTTGCAAAGCATGTCTTGAGAATGCATCTTTTTCCTTATTGGGATGCTTGCCCTGGTCAGAAGGGCGAGCGCTCAACACGGGCTGCTTCATGAGGTACTCAGACACAGATTTTCTTAACAAGGAGCAAGAAACTGGGAGTTCAAGAGGTAATGTGGTAGTAATAGTGGTTGCAGTAGTTAGTTCGGTGATTGTTTCAGTGGTTGGAGTGACTATTGGAGTTTATATATGGAAACAAAGATACATTCAGAAGAAACGAAGAGGTTCAAATGATGCAGAAAAGCTAGCAAAATCACTTCAGAACAAAAGCTTGAACTTCAAGTACTCTACATTGGACAAGGCTACTGGATCTTTTCATGAAAATAACAAGTTAGGGCAAGGAGGATTTGGAACAGTTTATAAAGGAGTTCTAGCTGATGGAAGAGAGATTGCTATCAAGAGGTTATATTTCAACAACAGACATAGAGCAGCAGATTTCTACAACGAAGTCAACATAATTAGTAGTGTGGAACACAAGAATCTGGTCAGACTGTTAGGATGCAGTTGTTCAGGACCTGAAAGTCTGCTTGTTTATGAATTTCTGCCCAATAAAAGTCTTGATCGCTTCATTTTTGATAAAAACAAGGGCAAGGAATTGAACTGGGAAAAGAGATTTGAAATTATCATCGGGACAACCGAAGGATTAGTTTATCTGCATGAGAACTCTAAGACAAGGATAATTCACAGAGATATAAAAGCCAGCAACATCCTGTTGGATGCAAAGTTTCGAGCTAAAATTGCAGATTTTGGTTTGGCCAGGTCCTTTCAAGAGGACAAGAGCCATATAAGTACAGCCATTGCAGGAACTTTGGGGTATATGGCTCCTGAGTACTTGGCTCATGGTCAGTTAACAGAAAAGGCAGATGTATATAGTTTTGGAGTGTTGCTGCTAGAGATGGTCACTGGTAGACAGAACAACAGGAGCAAAGTATCCGAGTATTCAGAATGCTTAGTTACAGTGGCATGGAAGCATTTTCAGGCAGGGACTGCTGAACAATTATTTGACCCAAATCTAGTTTTACAGGAAGACCACAACAGCGAGGTTAAGGATGAGATTTTAAGAGTGGTTCACATAGGACTTCTATGCACCCAAGAGGTCCCTTCTTTACGACCAATCATGTCAAAGACGTTACAGATGCTAACAAAGAAGGAGGAGAATCTTATTGCTCCCTCTAATCCACCCTTCCTAGATGAGAATACCATGGAACTTCATGACACAAATGGTGACCCATTTTATCCTCTTAATGCAGCTGATTCAATCGCTACCATGTCCCGTAGCTCATTTTATCCCAGGTGA 2049 0.4163 MAKNTDLRFSPLPFTLSSEEPTREIYFDWIVLKMKKIVSLVSLCNLSLLIKLLLLSKTVVAEPRAKPVLVTCGHVPEHNTTIFVPNFVATMDKISDEMRKTGFGTAVVGTGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCYPNNSGRIFLDGCFMRAENYSFFNEYKGPGDKAVCGNMTKKDSSFQAAAKQAVSRAVLDAPNNKGYARGNVAVEGATNQSVYVLADCWRTLDKRSCKACLENASFSLLGCLPWSEGRALNTGCFMRYSDTDFLNKEQETGSSRGNVVVIVVAVVSSVIVSVVGVTIGVYIWKQRYIQKKRRGSNDAEKLAKSLQNKSLNFKYSTLDKATGSFHENNKLGQGGFGTVYKGVLADGREIAIKRLYFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDKNKGKELNWEKRFEIIIGTTEGLVYLHENSKTRIIHRDIKASNILLDAKFRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEMVTGRQNNRSKVSEYSECLVTVAWKHFQAGTAEQLFDPNLVLQEDHNSEVKDEILRVVHIGLLCTQEVPSLRPIMSKTLQMLTKKEENLIAPSNPPFLDENTMELHDTNGDPFYPLNAADSIATMSRSSFYPR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01413 682 ProSiteProfiles Gnk2-homologous domain profile. 65 166 IPR002902 -
Phco4g01413 682 Gene3D - 71 166 IPR038408 -
Phco4g01413 682 Gene3D - 176 276 IPR038408 -
Phco4g01413 682 Coils Coil 320 340 - -
Phco4g01413 682 ProSiteProfiles Protein kinase domain profile. 356 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01413 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Phco4g01413 682 ProSiteProfiles Gnk2-homologous domain profile. 171 276 IPR002902 -
Phco4g01413 682 SMART serkin_6 356 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01413 682 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Phco4g01413 682 FunFam Cysteine-rich receptor-like protein kinase 2 432 639 - -
Phco4g01413 682 Pfam Salt stress response/antifungal 181 273 IPR002902 -
Phco4g01413 682 Pfam Salt stress response/antifungal 83 164 IPR002902 -
Phco4g01413 682 CDD STKc_IRAK 362 633 - -
Phco4g01413 682 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 116 655 - -
Phco4g01413 682 SUPERFAMILY Protein kinase-like (PK-like) 340 655 IPR011009 -
Phco4g01413 682 Gene3D Phosphorylase Kinase; domain 1 316 431 - -
Phco4g01413 682 FunFam Cysteine-rich receptor-like protein kinase 2 65 166 - -
Phco4g01413 682 FunFam Putative DUF26-domain receptor-like protein kinase family protein 324 431 - -
Phco4g01413 682 FunFam Cysteine-rich receptor-like protein kinase 3 175 276 - -
Phco4g01413 682 Gene3D Transferase(Phosphotransferase) domain 1 432 642 - -
Phco4g01413 682 Pfam Protein kinase domain 356 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01413 Phco-Chr4 12306879 12310242 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco4g01413 Pkinase 8.1e-47 CL0016