Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01412 ATGTCCCTTGCATCGTTTCTGCTTGTCTTCCTTTTTTGTCGTTTTTTTCCTGCTCTAGCTGATCCAAGAGCCACAGAGCTCGCAGTGATGTGCTCAAACACAACAGCACCAGTGCTTCAACGACAAGCTTTCTTAACAAACTTCTATGATGCCATGGAAGCCTTAACCGATTTGATTACAAGCCAAAGATATGCACTTGTGGTTAAAGGGACTACTCAAAATGAAACTGTATATGCTTTTGGTGAGTGCATGAAAGATCTGTCCAAACCAGATTGTGATGTCTGCTTTGCACAGTGCAAGACACGTGTCCATAGGTGCTCTCCGTTTCCGAGAGGCACTAATGGGGGCATGTTTTTCTTTGATGGGTGCTATCTTAGGTATGATGGCTACAACTTCTTCAATGAGAGTCTCAGTCCTCGGGACAGGACTATTTGTGGAACTGAAGATTTTAGAGGGAATTGGAGTGTGTTTAAGGCCAATACTGTGGAATTGGTGAGAAATTTGAGCATTGAAGCACCAAAGAATGAAGGGTTCTCTGTGGGGTATGTGAGAAGAAGTAATGTGACTATTTATGGGTTGGCTCAATGCTGGAAGTTTGTGAATAGCAGTTCCTGTCAGAACTGTTTGGCTGAAGCTATCACTAGGATTGGTTCATGTTCCCCAAAAGGGGAAGTGAAGGCATTGAATGCTGGGTGTTACTTGAGGTATGCTACACACAATTTCTATAATAGTTCAAACAACAATCCCCCTCAAGAACATCGAGGACACAACAATTATGCTATAATTGTGGCTGCGTCATCTGCTTCCTTGGCTTTCCTGCTGATTGTTGCAACAGTGATTTTCCTTGTGTGGACAAATTTACTAAAGCGGAGCAGAGAAAGAAGACAAGTTGGTGTACTTTTGAACACAGTGATCAAGTCCAAACTAAATATGCCGTATGAAATTCTTGAAAAAGCCACAGATTACTTCAGTGATTCCAATAAGGTAGGAGAAGGGGGATCAGGGTCAGTTTTTAAGGGAGTTCTGCCAGATGGAACTACCGTGGCTGTAAAAAGACTTACTTTTAACACATCACAATGGGCAGATCATTTTTTTAATGAGGTCAATTTGATCAGTGGCATTCGTCACAAAAATCTAGTGAAGCTTTTAGGGTGCAGCATTACAGGACCTGAAAGCCTTCTTGTTTATGAATTTGTGCCCAATCATAGCCTCTATTATCACCTATCTGGTAGAAGAAATTCTCAACAGTTAACATGGGAAGTCAGGCACAAAATCATATTTGGAACCGCAGAGGGTTTGGCCTATCTTCATGAAGAATCACAGAGAATCATTCATAGAGATATAAAATTAGGCAACATTCTCGTTGATGAGAACTTCACACCCAAGATTGCTGATTTTGGACTTGCCAGATTATTTCCTGAAGACAAGTCTCACCTTAGCACAGCCATTTGTGGCACACTGGGTTATATGGCTCCAGAATATGTAGTTCTAGGGAAGCTAACTGAGAAAGCAGATGTCTACAGTTTTGGAGTTCTGATTATGGAAATTATATCTGGCAAAAAGAGCAAATCCTTCGTTCAAAATTCATATTCTATCCTACACAGGGTTTGGAGCCTTTATGGATCAAACAAGCTATGTGACATTGTTGATACAATGCTGGAGGGAAATTATCCGGCAGAGGAAGCATGCAAACTCCTTAAGATAGGGTTGCTCTGTGCACAAGCATCTGCAGAGCTTAGACCAGCAATGTCAGTAGTTGTGAAAATGATTAACAACAATCATGAAATTACTCAACCAACACAACCACCCTTTCTTAATGGCAGTAGTGCAGAATCCAGCAAATCTATTTTACCAGGAGAAAGTTTTCAGCCTAGATCCTACACTCAGTCTTCAGAGGACAGCATGACCGAAAGTCTGATTCATCATAAATGGGTTACAATATAA 1944 0.4115 MSLASFLLVFLFCRFFPALADPRATELAVMCSNTTAPVLQRQAFLTNFYDAMEALTDLITSQRYALVVKGTTQNETVYAFGECMKDLSKPDCDVCFAQCKTRVHRCSPFPRGTNGGMFFFDGCYLRYDGYNFFNESLSPRDRTICGTEDFRGNWSVFKANTVELVRNLSIEAPKNEGFSVGYVRRSNVTIYGLAQCWKFVNSSSCQNCLAEAITRIGSCSPKGEVKALNAGCYLRYATHNFYNSSNNNPPQEHRGHNNYAIIVAASSASLAFLLIVATVIFLVWTNLLKRSRERRQVGVLLNTVIKSKLNMPYEILEKATDYFSDSNKVGEGGSGSVFKGVLPDGTTVAVKRLTFNTSQWADHFFNEVNLISGIRHKNLVKLLGCSITGPESLLVYEFVPNHSLYYHLSGRRNSQQLTWEVRHKIIFGTAEGLAYLHEESQRIIHRDIKLGNILVDENFTPKIADFGLARLFPEDKSHLSTAICGTLGYMAPEYVVLGKLTEKADVYSFGVLIMEIISGKKSKSFVQNSYSILHRVWSLYGSNKLCDIVDTMLEGNYPAEEACKLLKIGLLCAQASAELRPAMSVVVKMINNNHEITQPTQPPFLNGSSAESSKSILPGESFQPRSYTQSSEDSMTESLIHHKWVTI 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01412 647 CDD STKc_IRAK 329 592 - -
Phco4g01412 647 Gene3D Transferase(Phosphotransferase) domain 1 399 602 - -
Phco4g01412 647 SUPERFAMILY Protein kinase-like (PK-like) 309 614 IPR011009 -
Phco4g01412 647 Pfam Salt stress response/antifungal 39 128 IPR002902 -
Phco4g01412 647 Pfam Salt stress response/antifungal 149 238 IPR002902 -
Phco4g01412 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Phco4g01412 647 FunFam Cysteine-rich receptor-like protein kinase 3 141 241 - -
Phco4g01412 647 Gene3D - 24 132 IPR038408 -
Phco4g01412 647 Gene3D - 141 241 IPR038408 -
Phco4g01412 647 MobiDBLite consensus disorder prediction 598 634 - -
Phco4g01412 647 Gene3D Phosphorylase Kinase; domain 1 284 398 - -
Phco4g01412 647 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Phco4g01412 647 FunFam Cysteine-rich receptor-like protein kinase 2 289 398 - -
Phco4g01412 647 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 78 625 - -
Phco4g01412 647 ProSiteProfiles Gnk2-homologous domain profile. 138 241 IPR002902 -
Phco4g01412 647 SMART serkin_6 323 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01412 647 ProSiteProfiles Gnk2-homologous domain profile. 25 132 IPR002902 -
Phco4g01412 647 FunFam Cysteine-rich receptor-like protein kinase 2 399 598 - -
Phco4g01412 647 ProSiteProfiles Protein kinase domain profile. 323 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01412 647 Pfam Protein kinase domain 324 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01412 Phco-Chr4 12290382 12293507 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco4g01412 Pkinase 2.7e-45 CL0016