Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01393 ATGAAAGTTTATCTCCTTCTTTCTCTGCTTCTTCTGATTTCATTTCTCATTCCTCCTATGGTTGCTGGAACTGCGGAGCTTAGAGCTCTCATGGAGTTGAAGTCCTCTCTGGACCCAGATGGCAAGATCCTAGCCTCCTGGATCAGTGACGGTGACCCATGCAGTGGCTTCTTCGAAGGGGTTGCGTGCAACCAGAACCAAAAAGTGGCCAACATCTCCTTGCAGGGAAAGGGTCTTTCGGGTTGGCTATCTCCAGCACTGGCTGAACTCAAATGCTTGTCAGGTTTATACTTGCATTATAACAACCTTTCTGGTGAGATACCCCCACACATTTCAAATCTCACTGATCTGGTTGATCTCTATCTCGACGTCAATAGTTTATCTGGTACTATTCCTCCTGAGCTCGGCAACATGGCTAGTCTCCAAGTGCTGCAGTTGGGTGATAACCAGTTGGTGGGGAATATACCGACACAGATGGGTTCCTTAAAGCAGCTTAGTACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCTCTTAGCTTGGGGACGTTAGAGAAGTTAAGAAGGCTAAATTTGAGCTTCAACAACTTTAATGGTACTGTTCCGGCGACACTAGCACATATTGAACATTTGGAAGTTCTAGACGTTCAGAACAATTCTTTATCAGGAATTGTTCCTTCGGCCTTGAAGAGACTTGGGGAAGGATTCCAAGGTGCAAACAACCCTGGTTTATGTGGAGTTGAGTTTTCTACTTTGAAAGCTTGCAACAAAGATCAGAATTTAAACGTTAACCATATTGATACCTTGGATCGAGATCAACCCAAAAGTCGTAATTCTTCGAAGGCTCTCCCAGAGCCTGCAAATGTTCAGTTGCATTGTGACCATACCCATTGTTCAAAATCACGGTTTCCTCAAATTGTCATCACAGCAGGTGTTGTAGTTGTTAGTCTTACATTCATATGTGCTGGATTTTTGACATTCTTCAGATACCGCCGTCAAAAGCAAAGGATCAGCAATACATCTAATTCTTATTCTCAAGGGAAACTTAGTCCTGACAAGCCTAAAGAGTTGTACACAAAAAGTCCTTCTGCACTTGTTAATATTGAGTATTATAGTGGGTGGGATCATTTGTCTAATGGCCAAAATGCTGATGCTGGTGGATTATTGAATGATTATCTAGGTCAATTCAGGTTTAATGTGGATGAGGTTGAATCTGCAACACAGTATCTATCGGAAGCCAGTTTACTTGGTAAGAGCAAATTCTCAGCAGTTTATAAAGGAGTTCTCAGAGATGGTTCTCTTGTGGCTATTAGAAGCATCAGCGTGACATGCTGTAAAACCGAGGAAGCTGAATTTGTAAAGGGGTTGAACCTACTAACCTCTCTCAGACATGAAAACCTTGTTAGGCTGAGAGGTTTCTGTTGCTCAAGAAGTAGAGGCGAATGTTTCCTTATCTATGACTTTGCCACCATGGGTAACCTGTCTCAATATCTTGACTTAGAAGATGGAAGTGGCCATGTGCTTGAGTGGTCCAAAAGAGTTTCTATCATCAACGGCATTGCAAAGGGCATTGGATATCTTCATAGCAATGAAGCAAGCAAACCTACAATAGTTCACCAGAATATTTCAGTGGAAAATGTTCTCCTAGACCATCAGTTTAATCCATTGATCATGGATGCTGGACTACCTAAGCTTCTTGCAGATGATGTTGTTTTCTCAGCTCTTAAAGTAAGTGCTGCAATGGGATACTTGGCTCCCGAATACATTACTACTGGACGATTTACTGAGAAGAGTGACATATACGCATTTGGAGTTATTATTCTTCAAGTTCTATCTGGCAAGACGACAATAGGTAGTTCAATACGGACAGCAGTTGAGTCTTTCAGATTTGATGATTCTGTTGACGCAAATCTTAGGGGAAGGTATTCTAAATCTGAAGCAGCCACACTTTCAAAGCTAGCAATACAGTGTACTCATGAGTTTCCTGACCAAAGACCAACCGTGGTGGATGTGATTCAGGAGTTGACTGTGTCTTCTGCTCATTTATAA 2055 0.4195 MKVYLLLSLLLLISFLIPPMVAGTAELRALMELKSSLDPDGKILASWISDGDPCSGFFEGVACNQNQKVANISLQGKGLSGWLSPALAELKCLSGLYLHYNNLSGEIPPHISNLTDLVDLYLDVNSLSGTIPPELGNMASLQVLQLGDNQLVGNIPTQMGSLKQLSTLALQYNKLTGQIPLSLGTLEKLRRLNLSFNNFNGTVPATLAHIEHLEVLDVQNNSLSGIVPSALKRLGEGFQGANNPGLCGVEFSTLKACNKDQNLNVNHIDTLDRDQPKSRNSSKALPEPANVQLHCDHTHCSKSRFPQIVITAGVVVVSLTFICAGFLTFFRYRRQKQRISNTSNSYSQGKLSPDKPKELYTKSPSALVNIEYYSGWDHLSNGQNADAGGLLNDYLGQFRFNVDEVESATQYLSEASLLGKSKFSAVYKGVLRDGSLVAIRSISVTCCKTEEAEFVKGLNLLTSLRHENLVRLRGFCCSRSRGECFLIYDFATMGNLSQYLDLEDGSGHVLEWSKRVSIINGIAKGIGYLHSNEASKPTIVHQNISVENVLLDHQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIILQVLSGKTTIGSSIRTAVESFRFDDSVDANLRGRYSKSEAATLSKLAIQCTHEFPDQRPTVVDVIQELTVSSAHL 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01393 684 SUPERFAMILY Protein kinase-like (PK-like) 395 679 IPR011009 -
Phco4g01393 684 ProSiteProfiles Protein kinase domain profile. 412 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01393 684 Pfam Protein tyrosine and serine/threonine kinase 416 677 IPR001245 GO:0004672|GO:0006468
Phco4g01393 684 FunFam Protein NSP-INTERACTING KINASE 2 491 681 - -
Phco4g01393 684 Gene3D Ribonuclease Inhibitor 24 174 IPR032675 -
Phco4g01393 684 SMART LRR_typ_2 210 233 IPR003591 -
Phco4g01393 684 SMART LRR_typ_2 138 162 IPR003591 -
Phco4g01393 684 SMART LRR_typ_2 186 209 IPR003591 -
Phco4g01393 684 SMART LRR_typ_2 90 114 IPR003591 -
Phco4g01393 684 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Phco4g01393 684 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 125 679 IPR046959 -
Phco4g01393 684 SUPERFAMILY L domain-like 26 233 - -
Phco4g01393 684 Gene3D Phosphorylase Kinase; domain 1 384 490 - -
Phco4g01393 684 Pfam Leucine Rich Repeat 212 234 IPR001611 GO:0005515
Phco4g01393 684 Gene3D Ribonuclease Inhibitor 175 243 IPR032675 -
Phco4g01393 684 Gene3D Transferase(Phosphotransferase) domain 1 493 683 - -
Phco4g01393 684 FunFam Protein NSP-INTERACTING KINASE 2 383 490 - -
Phco4g01393 684 FunFam Protein NSP-INTERACTING KINASE 2 23 172 - -
Phco4g01393 684 MobiDBLite consensus disorder prediction 268 287 - -
Phco4g01393 684 Pfam Leucine rich repeat 140 199 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01393 Phco-Chr4 12076524 12079067 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Phco4g01393 PK_Tyr_Ser-Thr 4.6e-37 CL0016