Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01390 ATGCTTACATGTAGCTCTGCCTTTGGGTCACCAATTCTTGAGCATCACCGATTTTATGCAGTGAGAACATCCCATATTGGTTCCCACATAGCTTTCACAACACCTTGGTGGGCCCCCAAATTCCCCCAGTTTTTCTGTGTCTCTTATTTGAGTGTTGTTAGGGATGCATCTTTTTTATCTGATATAATAATTAAGCAGGAAAAGGAGTGCGGTTTATTAATATATAAACTTTGGTGTGGGACTTTTGAGTCGTCTCCACAAGAAGCTAGTTTGAAGGTTTGCATTGTTAGTGGTATGGGGAGACAGCCTTGCTGTGACAAACTTGGAGTGAAGAAAGGTCCATGGACTGCTGAGGAAGACAAAAAACTGATAAACTTCATTCTCACCAATGGCCAGTGCTGTTGGCGTGCTGTTCCCAAGCTTGCTGGCCTTCGTCGTTGTGGTAAGAGTTGTCGTCTTCGCTGGACTAATTATCTAAGGCCTGACTTGAAGAGAGGCCTCCTCACACAGTCAGAAGAGGAGCTTGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCAGGAAGAACAGACAACGAGATTAAAAATCACTGGAACACCCACATCAAGAAAAAGCTCCTTAAGATGGGTATCGATCCTGTTACTCATGAACCTCTCAACAAACAACTCTCATCCCATGATAGTTCTTCCCCTGCAGACCATTTGCCACAAGTTGATAACATCCATCAGGTTAAGGAAAATGGTGTGACTCTCAACTGGGAAGAGAATTCCACCTCATCACCAGCTGAAAATTCTTCTGGGGAAGAATCCCTTTTGATGAATAGCATTTGCAGTGATGTGTCTTTAATGAACAGCATGTGGCTGGATGAAACTCCTCTTGTGGACACATTATGGGACAGTGCACCTAAATTAGAGAGTGAAAATAATGGCATGGGCTTGCCAATGTGGGAGGATAACTGTCCTTGGTTGTTGGACTGCCAGGACTTTGGTATTCATGATTTTGGTTTTAATTGTTTCAGCCAGATTGAATCAAATGCACTGCAAACTACAGACATGGACAGAAAAGGGCTTTAG 1098 0.4372 MLTCSSAFGSPILEHHRFYAVRTSHIGSHIAFTTPWWAPKFPQFFCVSYLSVVRDASFLSDIIIKQEKECGLLIYKLWCGTFESSPQEASLKVCIVSGMGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQSEEELVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQLSSHDSSSPADHLPQVDNIHQVKENGVTLNWEENSTSSPAENSSGEESLLMNSICSDVSLMNSMWLDETPLVDTLWDSAPKLESENNGMGLPMWEDNCPWLLDCQDFGIHDFGFNCFSQIESNALQTTDMDRKGL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01390 365 ProSiteProfiles Myb-like domain profile. 107 159 IPR001005 -
Phco4g01390 365 FunFam MYB transcription factor 109 165 - -
Phco4g01390 365 CDD SANT 114 159 IPR001005 -
Phco4g01390 365 Pfam Myb-like DNA-binding domain 169 209 IPR001005 -
Phco4g01390 365 Pfam Myb-like DNA-binding domain 112 159 IPR001005 -
Phco4g01390 365 SUPERFAMILY Homeodomain-like 109 206 IPR009057 -
Phco4g01390 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 159 IPR017930 -
Phco4g01390 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 214 IPR017930 -
Phco4g01390 365 CDD SANT 169 210 IPR001005 -
Phco4g01390 365 FunFam MYB transcription factor 168 243 - -
Phco4g01390 365 Gene3D - 168 239 - -
Phco4g01390 365 ProSiteProfiles Myb-like domain profile. 160 210 IPR001005 -
Phco4g01390 365 SMART sant 111 161 IPR001005 -
Phco4g01390 365 SMART sant 164 212 IPR001005 -
Phco4g01390 365 Gene3D - 110 165 - -
Phco4g01390 365 PANTHER F14D16.11-RELATED 99 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01390 Phco-Chr4 12050592 12052275 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco4g01390 Myb_DNA-binding 4.4e-13 CL0123