Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01357 ATGGAGCGCCACAAATGCAAGCTCTGTTCCAGAACATTCGCCAATGGCAGAGCCCTCGGTGGTCACATGAAGGCTCACTTAGCCACCCTTCCTCTTCCCCCCAAACCCCAACGTCTCCCTCACTCTCTTAATACTTTCTCTTCCAATTCCTCTTCACGTCAAGAGATAGAAGACGATGATAACGAAGAAGATGAAGAAAAGGCTCTGATCAACTACGCCTTGCGAGAGAATCCCAAGAAATGCTTCAGGCTCGCAGATCCCGAGTTCGACTCGGGCTCTGTCGTGCAAGACAGGGAGAGTGAGACCGAGTCAAAGAACCCAACTCGCCGACGATCCAAGCGGCCCCGCAGGCCCGCCAATTTCCAACCCAAAGCCCGGCCCAAACTCAGCTTCATGGAGTCCCCTGAACCCGTTAGCTCCGTCTCCGACACTTCCCCCGAGGAAGATGTGGCCATGTGTCTCATGATGCTGTCCAGGGACCGTTGGAGCAAGAACACCAACGTGGTTGTCGGCAACGACGTTGTCGAAGAGGAAGAAGAGAGATCAGTGGAAGAGATCAAGTTGAGGAGAGTTCGCCGGAAGCACCAGTGTGAGAGTTGCGAGAAGACGTTTCGATCTTCACGTGCATTGGGCAGTCACCGAAGCATCTGCGGAGGGTCGGGTAACGATAGTAAAATCTTCGAATGCCCCTTTTGTTCTAAGGTGTTTGGGTCTGGTCAAGCACTGGGTGGCCACAAGAGATCTCACCTGGTACCTTCTTCCTCCTCCACCGCGAATGATTCCACCAGGTTCAAAGACAGCTTCATAGATCTCAACATGCCTGCTCCCACCGAAGAAGACGACCTCAGTGTTGTTTCTGATGCCCAATTCGATGACTAA 879 0.529 MERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPQRLPHSLNTFSSNSSSRQEIEDDDNEEDEEKALINYALRENPKKCFRLADPEFDSGSVVQDRESETESKNPTRRRSKRPRRPANFQPKARPKLSFMESPEPVSSVSDTSPEEDVAMCLMMLSRDRWSKNTNVVVGNDVVEEEEERSVEEIKLRRVRRKHQCESCEKTFRSSRALGSHRSICGGSGNDSKIFECPFCSKVFGSGQALGGHKRSHLVPSSSSTANDSTRFKDSFIDLNMPAPTEEDDLSVVSDAQFDD 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01357 292 Pfam C2H2-type zinc finger 227 249 - -
Phco4g01357 292 Pfam C2H2-type zinc finger 195 214 - -
Phco4g01357 292 Pfam C2H2-type zinc finger 3 28 - -
Phco4g01357 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 249 IPR013087 -
Phco4g01357 292 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Phco4g01357 292 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Phco4g01357 292 Coils Coil 174 194 - -
Phco4g01357 292 MobiDBLite consensus disorder prediction 244 292 - -
Phco4g01357 292 MobiDBLite consensus disorder prediction 90 108 - -
Phco4g01357 292 SUPERFAMILY beta-beta-alpha zinc fingers 193 249 IPR036236 -
Phco4g01357 292 MobiDBLite consensus disorder prediction 90 145 - -
Phco4g01357 292 ProSitePatterns Zinc finger C2H2 type domain signature. 229 249 IPR013087 -
Phco4g01357 292 MobiDBLite consensus disorder prediction 249 266 - -
Phco4g01357 292 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 290 IPR044303 GO:0006355
Phco4g01357 292 MobiDBLite consensus disorder prediction 30 67 - -
Phco4g01357 292 SMART c2h2final6 227 249 IPR013087 -
Phco4g01357 292 SMART c2h2final6 195 215 IPR013087 -
Phco4g01357 292 SMART c2h2final6 4 26 IPR013087 -
Phco4g01357 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Phco4g01357 292 Gene3D Classic Zinc Finger 171 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01357 Phco-Chr4 11626905 11627783 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco4g01357 zf-C2H2_6 1.7e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01357 4 11626905 11627783 Phco8g00781 8 7819734 7820576 PCT