Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01335 ATGGCACCCCAGAATAATGAAACAGCCAAGAAAACTAACAACAGAGGAGCATGGACCGCGGAAGAAGATCAGAAGCTGGCCCAATGCATTGAAATTCACGGTGCAAAGAGGTGGAAAACTGTTGCAATTAAATCAGGTCTAAACAGATGCGGAAAAAGTTGCAGGTTGAGATGGTTAAACTATCTGAGACCCAATATCAAGAGGGGCAACATATCAGTTGAAGAAGAGGATTTGATTATTAGGCTTCACAAACTTCTGGGAAACAGGTGGTCATTGATAGCTAAGAGACTTCCAGGACGAACAGACAATGAAATTAAGAACTACTGGAATACTTGTTTGTGCAAAAAAGTTAATCATCACACAAAGGTGAAACCAGAAACTTCAACGGCACAACCAACACATTCGACTCAGAATACTGAGGAAAAAGTAGCAGCAGAGAATAAAGAAGGCACTGATGATGGGAGTGGAGACTCAGAAGTTAACTTTGATGTCAACGAATTCTTCAACTTCTCCATTGAAGGACCCTATGCGTTCGATTGGGTGATCTAG 549 0.4153 MAPQNNETAKKTNNRGAWTAEEDQKLAQCIEIHGAKRWKTVAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLIIRLHKLLGNRWSLIAKRLPGRTDNEIKNYWNTCLCKKVNHHTKVKPETSTAQPTHSTQNTEEKVAAENKEGTDDGSGDSEVNFDVNEFFNFSIEGPYAFDWVI 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01335 182 FunFam Transcription factor TT2 71 143 - -
Phco4g01335 182 SMART sant 14 64 IPR001005 -
Phco4g01335 182 SMART sant 67 115 IPR001005 -
Phco4g01335 182 FunFam MYB-related transcription factor 14 67 - -
Phco4g01335 182 MobiDBLite consensus disorder prediction 141 155 - -
Phco4g01335 182 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Phco4g01335 182 Gene3D - 6 68 - -
Phco4g01335 182 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Phco4g01335 182 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Phco4g01335 182 CDD SANT 72 111 IPR001005 -
Phco4g01335 182 MobiDBLite consensus disorder prediction 124 140 - -
Phco4g01335 182 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Phco4g01335 182 MobiDBLite consensus disorder prediction 123 159 - -
Phco4g01335 182 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Phco4g01335 182 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Phco4g01335 182 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 7 147 - -
Phco4g01335 182 CDD SANT 17 62 IPR001005 -
Phco4g01335 182 Gene3D - 72 149 - -
Phco4g01335 182 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01335 Phco-Chr4 11442891 11443650 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco4g01335 Myb_DNA-binding 4e-17 CL0123