Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01329 ATGACGGCTGAAAAAGAAGACTTGGGTTTGAGTCTAAGCTTGAGCTTCCCTCACAACGCTCCAACTCCTCTTCATCTCAATCTCCTCTCACCTTCCACTTATTCCTCTTCTCCTTCAAGCCACAACCCTCACAAACCCTCTTGGAACCAGCCCTTCACTTCTTCAGGTGAAGCTGGATCATTCCTCCGCGGAATCGATGTGAACCGGTTACCTTCTGTGCTCGATTGCGAAGAGGAAGCCGGTGTTTCGTCTCCCAACAGCACGGTTTCTAGTGTGAGCGAAAAGCGCAGCGAGAGGGAAGCCAATGGGGAAGAAGAACACGACACAGAGAGAGGTTCTTTCAGAGGCATCAGCGACGAAGAAGAAGGTGAAACCTGTAGAAAGAAACTTAGACTCTCCAAAGACCAATCAATTATTCTTGAAGAGAGCTTCAAAGAACACAGCACTCTTAACCCGAAACAAAAGTTGGCACTGGCGAAACAGTTGGGTCTTCGAGCAAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACGAAGCTGAAACAGACGGAGGTGGACTGCGAGTTTTTGAAAAGGTGCTGTGAGAATCTGACGGAGGAAAACAGAAGGTTGCAGAAGGAAGTGCAAGAGCTTAGAGCACTCAAACTTTCCCCTCAGTTCTACATGCACATGACTCCCCCCACCACCCTCACCATGTGCCCCTCTTGTGAGCGTGTCGCTGTTCCCCCTTCCTCTGCCGTTGATGCTGCCACGCGTCACCATCACGTGCCCCAAACCCGCTCTCGGGCCTTCCCCATTGGCCCATGGGCTACCTCTGCCCCCTCTATTTCACACAGGCCATTCGATGCCCTCCGTCCCAGATCTTGA 873 0.5178 MTAEKEDLGLSLSLSFPHNAPTPLHLNLLSPSTYSSSPSSHNPHKPSWNQPFTSSGEAGSFLRGIDVNRLPSVLDCEEEAGVSSPNSTVSSVSEKRSEREANGEEEHDTERGSFRGISDEEEGETCRKKLRLSKDQSIILEESFKEHSTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSSAVDAATRHHHVPQTRSRAFPIGPWATSAPSISHRPFDALRPRS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01329 290 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Phco4g01329 290 MobiDBLite consensus disorder prediction 76 126 - -
Phco4g01329 290 Coils Coil 182 219 - -
Phco4g01329 290 SMART halz 183 226 IPR003106 GO:0006355|GO:0043565
Phco4g01329 290 Gene3D - 131 181 - -
Phco4g01329 290 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Phco4g01329 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 42 256 - -
Phco4g01329 290 MobiDBLite consensus disorder prediction 93 126 - -
Phco4g01329 290 Pfam Homeobox associated leucine zipper 183 217 IPR003106 GO:0006355|GO:0043565
Phco4g01329 290 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Phco4g01329 290 SUPERFAMILY Homeodomain-like 126 191 IPR009057 -
Phco4g01329 290 Pfam HD-ZIP protein N terminus 3 100 IPR006712 GO:0005634
Phco4g01329 290 MobiDBLite consensus disorder prediction 1 55 - -
Phco4g01329 290 FunFam Homeobox-leucine zipper protein 18 115 188 - -
Phco4g01329 290 PRINTS Lambda-repressor HTH signature 154 163 IPR000047 GO:0003677
Phco4g01329 290 PRINTS Lambda-repressor HTH signature 163 179 IPR000047 GO:0003677
Phco4g01329 290 SMART HOX_1 125 187 IPR001356 GO:0003677
Phco4g01329 290 MobiDBLite consensus disorder prediction 15 55 - -
Phco4g01329 290 CDD homeodomain 127 184 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01329 Phco-Chr4 11389514 11390845 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco4g01329 HD-ZIP_N 3.4e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01329 4 11389514 11390845 Phco8g00806 8 8142766 8145687 PCT