Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01318 ATGGATTCGGTCCCAAGCTTTGAAGGCCTCAATTCCAAGCTTCCCAGTTCATGGTCCTCGCTTTCATTCCCTTCTGAGCCCCCTGATGTTGGGAATTGGTTCTCTAGCTATGAGTATCAATCTCCCGATCCGGATTCGAATTTCAGTGTTGAAGATTCTGCTTTCACGGAAAACGAATCTCAGGCAGCTGGTGCAGAAGAAGTAGAAGCAAAGGTTAGGATTCGAGGTCTAGCTGATGGAGACAAGGTAGTTCAAGAAGAAGGGGATAATCATAACGAAGACCAGTGCACGAACAAGAATCTTGGACCATTCAGTTCATGTTCACTCCTTTCTGAGCCTCCAGACATCAGAAACTGGTTCTCCAGCTATGTTTACGAGTCACCTGAGTCTGATACATGTAGTCTTTTAAGAGACGAAGTTTCTGAAGAAAATCAGCGCGGGAAGACGTTTGATTTTGAAGTCGTGAAAGCAGATGGAAGCAGGTCTGCAAATGGCCACCCGAAAGGGTGTGTTGAGCACAATAACTCCTTTGATAAAAACACAACGGGTGATCACAGTGCTGAATTGAAGAAAAATTCAACTACAGTTGACACTTATCCGACAAAGATTTTGCAGCCATGCATGCAAGATGAAACACTGCAACATAATCTTGCTCCAACCAAGCACAAGGAGACATTGGACCTGAATCACAGAAGTCCTGGTTACGATCGAAAACGACATTTAATGCCACTGGATACCGATAGAAGTGCAATGAGACCTCCAAAGCTGCTGCATAAGAATGATACCCAAATATCAAAAGCAAAAACTGATATCCAACATGATTACAAGCTTGACTTGAGTGCAAGTGCTACTAAAACCTTCTCAACAAGAAGTGCAGCCTGTACAAGCAATAAAGAAAATGATGGCTTTGTGACAACAAGGAAGAAGATTTGCAATAGAGCTAATGATGAACCTTCGTGGAAGAAACCTGAGAAGATATTATTAGAGCGGTCAAGAAGTACAGTATCGATTCCATTGCAATGTGGTGTTACAAAGAGAAAGGCATTAACAGAATCAACAAATGTTCAACAGTATAATGACATGGGGATAACAGGGAAATGGCAATGCCCACAGAAACGTAAACCTGATGTTGGGCCTGTTATGAAACAACTTAGGCTCGAGCGCTGGGTGGAGCAGGAAGAAGAAGCGAAAGCAATGGCTTGTTCTGCTAAAAGGTGGCTTCCGCTCGAAGCAAACCCTGATGTCATGAATCAGTTCCTTTGGGGGCTTGGGCTTGGAGAGGACGAGGCAGAATGCTGTGATGTTTATGGCTTAGACGAAGAGCTTCTGCAAATGGTTCCAAACCCCGTTCTCGCCGTGCTTTTTCTTTATCCCATAACCACCCAGAGTGAAGAAGAAAGGTTGCAGCAAGAAAATGAAAAAAAGGAATATAGCAGTAGAGTGTACTTTATGAAGCAAACCGTGGGTAATGCTTGTGGGACAATTGGACTGCTTCACGCTCTTGGCAACTTGACTTCTGAAGTCAAGCTCGTTGAGGGGTCTTTCTTTGATAACTTCTTTAAATCTACTGCAAGCATGGATCCACTGCAGCGTGCCAAATTTCTGGAGAATGACAGAGAAATGGAAGTGGCTCATTCAGTGGCAGCATATGCTGGTGATACAGAGGCATCAGACAATGCAGTTGCACATTTCATATGCTTTGCCTGTGTTGATGATGAACTTTATGAGCTTGATGGAAGAAAATCGTGGCCAATATCTCATGGTCCATCGTCACGAAGTACATTGTTGAGGGATGCAGCTAAGGTAATACAGAGCATGATCCAGAAAAATCCGGAGTCCCTCAACTTCAATGTCATCGCCTTGTACAAGAAATCCGGGTAG 1881 0.4381 MDSVPSFEGLNSKLPSSWSSLSFPSEPPDVGNWFSSYEYQSPDPDSNFSVEDSAFTENESQAAGAEEVEAKVRIRGLADGDKVVQEEGDNHNEDQCTNKNLGPFSSCSLLSEPPDIRNWFSSYVYESPESDTCSLLRDEVSEENQRGKTFDFEVVKADGSRSANGHPKGCVEHNNSFDKNTTGDHSAELKKNSTTVDTYPTKILQPCMQDETLQHNLAPTKHKETLDLNHRSPGYDRKRHLMPLDTDRSAMRPPKLLHKNDTQISKAKTDIQHDYKLDLSASATKTFSTRSAACTSNKENDGFVTTRKKICNRANDEPSWKKPEKILLERSRSTVSIPLQCGVTKRKALTESTNVQQYNDMGITGKWQCPQKRKPDVGPVMKQLRLERWVEQEEEAKAMACSAKRWLPLEANPDVMNQFLWGLGLGEDEAECCDVYGLDEELLQMVPNPVLAVLFLYPITTQSEEERLQQENEKKEYSSRVYFMKQTVGNACGTIGLLHALGNLTSEVKLVEGSFFDNFFKSTASMDPLQRAKFLENDREMEVAHSVAAYAGDTEASDNAVAHFICFACVDDELYELDGRKSWPISHGPSSRSTLLRDAAKVIQSMIQKNPESLNFNVIALYKKSG 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01318 626 SUPERFAMILY Cysteine proteinases 404 623 IPR038765 -
Phco4g01318 626 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 446 458 IPR001578 GO:0004843|GO:0006511
Phco4g01318 626 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 574 584 IPR001578 GO:0004843|GO:0006511
Phco4g01318 626 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 408 425 IPR001578 GO:0004843|GO:0006511
Phco4g01318 626 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 558 569 IPR001578 GO:0004843|GO:0006511
Phco4g01318 626 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 486 503 IPR001578 GO:0004843|GO:0006511
Phco4g01318 626 Gene3D - 400 624 IPR036959 GO:0004843|GO:0006511
Phco4g01318 626 FunFam Ubiquitin carboxyl-terminal hydrolase 400 624 - -
Phco4g01318 626 MobiDBLite consensus disorder prediction 34 60 - -
Phco4g01318 626 MobiDBLite consensus disorder prediction 159 194 - -
Phco4g01318 626 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 406 607 IPR001578 GO:0004843|GO:0006511
Phco4g01318 626 MobiDBLite consensus disorder prediction 1 26 - -
Phco4g01318 626 MobiDBLite consensus disorder prediction 174 194 - -
Phco4g01318 626 MobiDBLite consensus disorder prediction 1 68 - -
Phco4g01318 626 CDD Peptidase_C12_UCH_L1_L3 406 621 - -
Phco4g01318 626 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 404 623 IPR001578 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01318 Phco-Chr4 11287470 11294262 Dispersed/Wgd