Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01305 ATGGGTAAACAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGCAATGGACCACCTGAGAAGCCAGTTCTATGCAATGCATGCGGGTCTCGGTGGAGGACAAAGGGAACTCTTGCAAATTATACCCCTTTACATGCTCGAACTGAAACTGATGCTTGTGGAGATCAAAGGGTTTCCAGGGTAAAGAGCATATCAAATAAGAAGAGAGAAGTGACATTGCTCAAACAAAATAATAACCATGATAATGTACTATCTGGAGGGTTTGCACCTGATTATAACCAGGGAGGTCAAATCTTCGTGGATGAAGATGTAAGCAACCGATCAAGCTCTGGATCAGCTATCTCTAACTCAGAGAGCTGTGCACAATTTGGTGTCATGGATGCTTGTGATCTGACAGGTCCTGCCCAGTCAGTGGTTTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGCGTTAGCCGTCCAAAGCCTTCTTCTGTTGAGAAGCTAACAAAAGATTTATGTACTATTCTTCATGAACAACAGTCTTATTTTTCTGCATCTTCTGAAGAAGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTATATAGTCCGTGAAGAAGAGTCTGAGGCTAGTTCTTTTTCAGTTGATAATAAACAATGCCCAACGAGTGAGGCATATTCTTATGTTGGTCCCATTCTAATGCATAATGATTCTAGTTACTTGAAACCATCATCTCTGGAAGTTGAAAAGATCAGGAACTATACTGGCTTAGGAAGGGAGCCGGAGCAACATAAAAGTGAAAAGTCTCAACTTGAAAGAGTACAAATCCTTGGCAATCATGAATCACCGCTGTGTTCTATTGATTTAAATGATATAGTAAACTATGAAGAGTTTTTGAGAATCTTGACAAATGAAGAGCAACAACAGTTACTGAAGTTACTTCCAGTGGTTGATACTGCTAAACTTCCTGATAGCCTTAAAGTCATGTTCAATAGTTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGCGGAAGGAGTTTTTGATATCTCTTTGTTGGGGGCAAAACCTGAAGACTGCAAGACTTTGAAAAGACTTGCAATATCCAATCTGTCAAAGTCAAAATGGGTAGAACACTATAATTTTGTCAAGAAATATAAAAACAAAGCTGGCAAATTTGATTCTCTTGGATCTGCTGGTACAGCATCAACTAATGTTGCAAACAAGAGAACACGTGACAGCAGAAATCAAAACTTTCCAGAATTGAATACAGTAATGAGGAGCCCCAAAAGAATGATCACAAAGGCTGGCTTTGAGGGCAAAGAGGGGGTAGAAGATGGTGTTTGCTATAGTCCAAAAAACCTCTTTGCTTTGCCTCCTGATGCTAGTTCACTCATGTTTGGTTCTTTAAACTTTGTTGAGGAGGTTGGTGACCAGGATCTGCTGCTAGAGGTGCCATCTAACACTTCTTTTCCCCAGGCAGAGCTCTTGCACCCAAGTGTAAGCCTTGGTGCTCAAGCCAGCACTAGTAGTAGCTCAGTCTACTCACATCTTAATCATCATTAA 1617 0.41 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDACGDQRVSRVKSISNKKREVTLLKQNNNHDNVLSGGFAPDYNQGGQIFVDEDVSNRSSSGSAISNSESCAQFGVMDACDLTGPAQSVVWDAMVPSKKRTCVSRPKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSILIRHPSYIVREEESEASSFSVDNKQCPTSEAYSYVGPILMHNDSSYLKPSSLEVEKIRNYTGLGREPEQHKSEKSQLERVQILGNHESPLCSIDLNDIVNYEEFLRILTNEEQQQLLKLLPVVDTAKLPDSLKVMFNSSQFKENLTYFQQLLAEGVFDISLLGAKPEDCKTLKRLAISNLSKSKWVEHYNFVKKYKNKAGKFDSLGSAGTASTNVANKRTRDSRNQNFPELNTVMRSPKRMITKAGFEGKEGVEDGVCYSPKNLFALPPDASSLMFGSLNFVEEVGDQDLLLEVPSNTSFPQAELLHPSVSLGAQASTSSSSVYSHLNHH 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01305 538 PANTHER OSJNBB0038F03.10 PROTEIN 1 533 IPR044589 -
Phco4g01305 538 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Phco4g01305 538 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Phco4g01305 538 Gene3D - 285 391 IPR038108 -
Phco4g01305 538 Pfam Asx homology domain 278 393 IPR028020 -
Phco4g01305 538 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 406 IPR044867 -
Phco4g01305 538 Gene3D - 3 84 IPR013088 GO:0006355|GO:0008270
Phco4g01305 538 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Phco4g01305 538 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Phco4g01305 538 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Phco4g01305 538 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01305 Phco-Chr4 11178510 11184190 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco4g01305 ASXH 1.2e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01305 4 11178510 11184190 Phco8g00825 8 8384836 8390098 PCT