Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01303 ATGCTCAATCCAGAGTCATCGAGAGAAATGACAACACCAGAAAATAATGGTCATTGTAAAGAAGAAAGATATGACTCATTGATGGAAGATGGGCACACTTTCCTTGTTAGGCCGGTGTATAAGCGGCGTAAAGTTTCCGCCATTCGTGATTTCCCTGATGGATGTGGACCATCTGCTTCAAGGATTGAGGAAGTATCAAATATAAATATCGCAGATTGTGGTTCTGTTAATGGTACAATTGTTGAGGTTAAGAGTGGTGAACATTTAGCGGGTGTGAAAACTTCCACCTGTGAAAATGATGGTTGGCATTCTCAGCCAAACAATTTGCCTTATATGGAGATTCTTGGCATGACAGCTGACAGTGGTTTGAATAAGGACAACCCCATGGTCTCATCTTATCATGTGGATGGATCCACTGCTGAAGACAAACTGGAAATAGGGACTCTTAGCCAAACCACTGATCGTGGATATACTGCTGAAGATAAACCAGGAATGATCACTATTAGCCAAACCACTGATTGTGGTTTGAACCAGGAAAGCCCTGTAGACTCATCTCATGGAGTGGATGGACACATTGCCAAAGGCGAAGCTGCAAAAGTGACTCTTGGTCGAACAACTGATTGTAGTTTGAATCAGGAAAACCCTGTGGTCTCATCTCATCAAGTGGATGGGTCTACTCCAGAAGATAACCCTGCAAAAGTGAAGCTTGGCCAAACAAAGGACTGCAGTTTGAATCTGGAAAACTTTGAGGTCTCATCACATCTAGTGAATGGGTCTATTGCAGAAGATGAACTTACAAAAGTGACTATTGTTGAGCGAACAACTGACTGTGGTTTGAATAAGGAAAACCTTGTGGTCTCATGTCGTCAAGTGGATGGCCCTACTGCAGAAGATAAACCTGCAAAAGTGCCTTCTGTGGACCCGAAAACTTTGAATACAGAGTTTGCAAGAACTTCAAACACTGGAAAATGTGACTCCTCTTATGTGTTGAAGTCATCTTCTCCAGTGGGTGAGATTGCTTTGCCCAGTGATTCAAAACACTTATTATCCAATGCTAATATTTCTGCTCCCAGTGCATGTATGGTGGAACCTATAACTAGAAGGTATCTTCCACAAAGAAAAGTTTCAGCTGTTAGAGACTTTCCTCCTTTATGTAGACGTAATGCTCCACGTGTTGGTAAGGACAAGCATGTGTGTCTAGAGGGGACCTCTTCTTTGAATAACAAGACAGATGGACAGAACCTGGCTGTAGATGACAATTCATTGAAAAAAGTAGCAGCTACTGATGTAAAAGAAGGTAAAAGTAACATTCAGGATGAATATAATTGCAATAGAAAGGTTGTTGACTTTGATCAACCTGATTCTGAAAGAAATGCTGCAGAGAGATTGAAAAAGCTGCAGGCATGTGAACTATCGTCTGAGATGAAAAAGTCACCAAAAAATGAGAGAGAAAGGTATGCTACTCCCCCTGCAACAAGTAATCATCATCAGATCAAATTAAATTCTAAGGCGGTGGTAAAAGAGAATAATAGGGACGAGACAAAGCCTTTGAGTATATCTCGTTCTAACCATAAGTTGAAAGGGAATTTTAATAGATTGCAGGTCTCATCACAAAGGAAAGTAATACTAGGTTTGATGGCTGATTCAGAATGTCCGTGGAGATCGGATAAAGGTTCCTCCAAATTTAAGTTGGTTGTTGGTAATAATAAAGGCAAGAAGAGAAAGAAAGGGGATTCTTTTGCATTGCCTGATAGGTCTAAAACAGATATCAAGACTACAGGTGCCTTGAATGATTCTGAGAAGAAGCCTTTGAAAAAGAAAAAGGGAAATGCTGCTTCCGAAGGTATGGGTGAATTAGTACTTTGGGAAAAGGATGATTATCTTGAGCCTAATGAATGTGATAACACTCTTCAAATTGTTCTGAGATCAAATGAGTTTGATGTAAACATTACTCCCTCTTCTCATTCTAATTTCACTGGTGATGAGAATGACCCAAATGTGACCCGAAAAAAAGTGAGGGAAACATTACGGTTGTTTCAAGTTATTTGTAGAAAGCTTTTACAGGAAGTAGAATCAAAGTTAAATGAGCGAGCCAATAGTAAGAGAGTTGATTTAGTAGCTTCAAGGATCCTTAAGGAGAATGGGAAATATGTCAACATAGGCAAGCAAATACTAGGCTGTGTCCCTGGTGTTGAAGTTGGTGATGAATTTCAATATAGAGTGGAGCTTAATATAGTTGGCCTTCATCGTCCAATTCAAGGTGGGATAGATTATGTGAGACACAATGGTAAGGTCCTTGCAACCAGTATTGTTGCATCAGGGGCCTATGCTGATGAGTTGGATAATTCGGATGTGTTGACATATACAGGGCAGGGCGGAAATGTGATGAACAATGATAAAAACCCTGAAGATCAGAAGCTTGAGCGGGGCAATCTTGCTTTGATGAACAGTAGTGTTGAAAAGAATCCTGTTAGAGTAATTCGTGGCTCTGAGTCAATGGATGGAAAGTGCAGGACTTATGTTTATGATGGACTGTATATAGTTGAGTCTGGTTGGGATGAACACGGACCACATGGGAAGAAAATTTTTAAGTTTAGACTGCGAAGAGAAGCTGGTCAACCAGAGCTTCCTTTGAGAGAAGTGAAGAAATCTAAAAAGTTCAAAACTAGAGAAGGTATATGTGTTGCTGATATTTCTTTTGGAAAAGAACGAATTCCGATATGTGCTGTGAACACCATAGATGATGAAAAACCTCCTCCGTTTAATTACATAACTAGCATGATATACTCCAAATTCAATCTCGTTCCTGCCGAAGGATGTGATTGTATTAATGGATGCTCAGATTCGGAGAAATGTTCGTGTGTTGTGAAAAATGGGGGAGAGATTCCATTCAATCACAATGAGGCTATTGTACAAGCAAAGCCTCTAGTTTATGAGTGTGGACCTACGTGCAAGTGTCCTTCTACGTGCCATAATAGAGTCAGCCAACTTGGCATAAAGTTACAACTTGAAATATTTAAAACCAATACAAGGGGATGGGGTGTGAGATCCCTTAGTTCAATCCCTTCAGGAAGTTTTATCTGTGAATATATAGGGGAGCTTCTTGAAGAAAAGGAAGCTGAACTAAGGGCAGGTAACGATGAGTATCTTTTTGACATTGGAAATAACTACAGCAACAGTGTTCTCTGGGATGGTCTTTCGACTCTCTTGCCGGATGCACAGGCAAGTTCCTGCGATGTTGTGAAGGATGGTGGTTTTACTATTGATGCTGCTGAGTTTGGCAACGTAGGGAGATTCATTAACCATAGTTGCTCCCCTAATATAATTGCTCAGAACGTCCTTTATGATCATCATGACACCAGAATGCCTCACATAATGTTCTTTGCTGCTGATAACATTCCTCCTTTGCAAGAGCTGACTTACGATTACAATTACGAAATAGATCAAGTCTTTGATTCTGATGGCAATATAAAAAGGAAGTATTGTTACTGTGGTTCTGCCGAATGTACTGGCAGGATGTATTGA 3525 0.4031 MLNPESSREMTTPENNGHCKEERYDSLMEDGHTFLVRPVYKRRKVSAIRDFPDGCGPSASRIEEVSNINIADCGSVNGTIVEVKSGEHLAGVKTSTCENDGWHSQPNNLPYMEILGMTADSGLNKDNPMVSSYHVDGSTAEDKLEIGTLSQTTDRGYTAEDKPGMITISQTTDCGLNQESPVDSSHGVDGHIAKGEAAKVTLGRTTDCSLNQENPVVSSHQVDGSTPEDNPAKVKLGQTKDCSLNLENFEVSSHLVNGSIAEDELTKVTIVERTTDCGLNKENLVVSCRQVDGPTAEDKPAKVPSVDPKTLNTEFARTSNTGKCDSSYVLKSSSPVGEIALPSDSKHLLSNANISAPSACMVEPITRRYLPQRKVSAVRDFPPLCRRNAPRVGKDKHVCLEGTSSLNNKTDGQNLAVDDNSLKKVAATDVKEGKSNIQDEYNCNRKVVDFDQPDSERNAAERLKKLQACELSSEMKKSPKNERERYATPPATSNHHQIKLNSKAVVKENNRDETKPLSISRSNHKLKGNFNRLQVSSQRKVILGLMADSECPWRSDKGSSKFKLVVGNNKGKKRKKGDSFALPDRSKTDIKTTGALNDSEKKPLKKKKGNAASEGMGELVLWEKDDYLEPNECDNTLQIVLRSNEFDVNITPSSHSNFTGDENDPNVTRKKVRETLRLFQVICRKLLQEVESKLNERANSKRVDLVASRILKENGKYVNIGKQILGCVPGVEVGDEFQYRVELNIVGLHRPIQGGIDYVRHNGKVLATSIVASGAYADELDNSDVLTYTGQGGNVMNNDKNPEDQKLERGNLALMNSSVEKNPVRVIRGSESMDGKCRTYVYDGLYIVESGWDEHGPHGKKIFKFRLRREAGQPELPLREVKKSKKFKTREGICVADISFGKERIPICAVNTIDDEKPPPFNYITSMIYSKFNLVPAEGCDCINGCSDSEKCSCVVKNGGEIPFNHNEAIVQAKPLVYECGPTCKCPSTCHNRVSQLGIKLQLEIFKTNTRGWGVRSLSSIPSGSFICEYIGELLEEKEAELRAGNDEYLFDIGNNYSNSVLWDGLSTLLPDAQASSCDVVKDGGFTIDAAEFGNVGRFINHSCSPNIIAQNVLYDHHDTRMPHIMFFAADNIPPLQELTYDYNYEIDQVFDSDGNIKRKYCYCGSAECTGRMY 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01303 1174 ProSiteProfiles SET domain profile. 1001 1144 IPR001214 GO:0005515
Phco4g01303 1174 Gene3D SET domain 890 1174 IPR046341 -
Phco4g01303 1174 MobiDBLite consensus disorder prediction 473 498 - -
Phco4g01303 1174 SUPERFAMILY PUA domain-like 708 883 IPR015947 -
Phco4g01303 1174 MobiDBLite consensus disorder prediction 571 585 - -
Phco4g01303 1174 Gene3D - 709 889 IPR036987 -
Phco4g01303 1174 SMART G9a_1 721 873 IPR003105 -
Phco4g01303 1174 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 421 1168 - -
Phco4g01303 1174 MobiDBLite consensus disorder prediction 594 610 - -
Phco4g01303 1174 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 234 1174 IPR025794 GO:0016571
Phco4g01303 1174 ProSiteProfiles YDG domain profile. 726 869 IPR003105 -
Phco4g01303 1174 SMART set_7 1001 1150 IPR001214 GO:0005515
Phco4g01303 1174 MobiDBLite consensus disorder prediction 566 610 - -
Phco4g01303 1174 SUPERFAMILY SET domain 885 1151 IPR046341 -
Phco4g01303 1174 Pfam SAD/SRA domain 725 873 IPR003105 -
Phco4g01303 1174 Pfam SET domain 1012 1144 IPR001214 GO:0005515
Phco4g01303 1174 SMART preset_2 895 985 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco4g01303 1174 Pfam Pre-SET motif 898 993 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco4g01303 1174 ProSiteProfiles Pre-SET domain profile. 938 998 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco4g01303 1174 ProSiteProfiles Post-SET domain profile. 1158 1174 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01303 Phco-Chr4 11166166 11169690 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco4g01303 SAD_SRA 5.8e-48 CL0178