Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01298 ATGGATCCATGGAACCTTTACACTTCCAAGTTTCTCTCTGAACAAGTTGCTTACCCTTCTCATCTCCACGCAGAAAAGGTTCCCAACATGGGAAATTCCAGTGGTGTGACCAAGGAGCTCAGAGGTTCGCAGATGACAATCTTTTATGATGGCCAAGTTGTTGTCTTTGATGATATTCAAGCTGATAAAGCCAAGGATATCATCATGTCTTTTGCCAACACAGGAATGTCTCAAAACCAGAACGGCTATGCTTACTCATACCCTGCTGCAATTTCTGCTACTTCCAGTAGACCGTTTCCTTTTCTTATGAATATCATCCCTACCACTACCAACAATTCGGTTCAGGAGCACCCTCAAGCACCATCCAAATCTGTTATATGTGATCTACCTTTGGCTAGAAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGCAGCCCTTAATAAGGCAGGTGAATCCTTGTCATGGCTCACCTTGGCACAAAAATCTCCACAAGACGAATCTGATTCTGATAGCAGCTCCAGCTTTGTGTTACTTTAG 588 0.432 MDPWNLYTSKFLSEQVAYPSHLHAEKVPNMGNSSGVTKELRGSQMTIFYDGQVVVFDDIQADKAKDIIMSFANTGMSQNQNGYAYSYPAAISATSSRPFPFLMNIIPTTTNNSVQEHPQAPSKSVICDLPLARKASLHRFLEKRKDRIAARAPYQTSNHMAALNKAGESLSWLTLAQKSPQDESDSDSSSSFVLL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01298 195 ProSiteProfiles Tify domain profile. 38 73 IPR010399 -
Phco4g01298 195 SMART tify_2 38 74 IPR010399 -
Phco4g01298 195 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 28 176 IPR040390 -
Phco4g01298 195 Pfam Jas motif 130 155 IPR018467 -
Phco4g01298 195 Pfam tify domain 43 69 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01298 Phco-Chr4 11122078 11123093 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Phco4g01298 tify 5.9e-14 No_clan