Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01268 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTTCCAAAGGGACTCAGGGTTCTTGTACTTGACGGAGATAGAAGTTCTGCTGCTGAGATAGGAGAACAGCTTGAGGCCATGGACTATAATGTTTCTATCTTCTATGACGAGAATGAAGCTTTGTCAGCAATCTCGAGTAGTCCTGAAGGCTTCCATGTTGCCATAGTGGAGGTGAGTACAAGCAGTAGCCTTGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCTACCATTATGACTTCAAAGAACCAGTGCCTGAACACCACAATGAAGTGCATTGCGCTTGGTGCCGTTGAGTTCCTCAGTAAACCACTCTCTGAGGACAAGCTCCAAAATATTTGGCAGCATGTTGTTCACAAGGTATTTAATGCTGGGGCAAATGGTCTGTCTGAATCACTAAAACCTGTCAAAGAATCCGTAGAATCGGTTCTGCAGCTCCAAACAGGCAATGAACAAGATAAAACTCATAAAAGGACGATGTCAATTGATTTAGAGAATGTGTCCAGGTTTGGTGATGATGAAAATGAGCAATCTGTATGTGATAAATATCCGGCTCCTTCAACCCCACAATTGAAACATGGGACACGTTTATTGGATGATGGAGATTGCCATGAGCAGACTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATGGGGAATGCAAATCAGTCGAAGCTTCATGTGAGAATTTGAATGCTGAAAGTTCTCCTCAACCAACTGAACCTGAGGAGACTCTGATTAAGGAGGAGGAGGATTTTGCCAATGGTTCCAAGGGCGAGAAAGCTGTTTCACCGAATCTACACAATGAAAAGTTTCTCAGCAATGCAGATGGTCATACATCTTCAAAAAAGACTGGAGTACTTCATGATTCATGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCCGAGCTGCATAAAAAATTTGTAAAGGCTGTCGAACAACTAGGTATTGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGTTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATACACAAGAGACAAAGTGCACCTGGGGAAGAAGATCGAAAATGGCATAATCAAAGAGATGCAATGCAAAGGAGCTTTTATCTGCAGAGACCAATCATGGCCTACCCTTCCTATCATTCTAATCAAACCCTTTCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGAAGTCAAATGGCTGGCGTACAGACGTGGGGCTCTCCTGCATACCCCTTGTGGCATCCTACAGAAAGTTGGAATTGGAAGCCTTATCCGGGGATGCACGTGGATGCTTGGGGATGCCCATTGTTCCCACCTCCTCAAGCTCCTGGTTTTCCCTACAATCAAAATATACCTGGATTGCACACACCTAAAGCAGTGGATTATAGATTCGGCATGCCACGTAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTGGTGAAAGAAGCAATTAACAAGCCATGGCTACCATTGCCCTTGGGACTCAAAGCTCCTTCCACGGACAGTGTGTTGGCTGAGCTCTCCAAACAAGGCATATCCAGCATCCCTCTTGGCAACAAGGGTTCTTCTGCTTCAAAACCCTGCTGA 1683 0.4427 MVCTANDLQGWKDFPKGLRVLVLDGDRSSAAEIGEQLEAMDYNVSIFYDENEALSAISSSPEGFHVAIVEVSTSSSLGGFKFLENAKDLPTIMTSKNQCLNTTMKCIALGAVEFLSKPLSEDKLQNIWQHVVHKVFNAGANGLSESLKPVKESVESVLQLQTGNEQDKTHKRTMSIDLENVSRFGDDENEQSVCDKYPAPSTPQLKHGTRLLDDGDCHEQTNCSTEKESGEHDGECKSVEASCENLNAESSPQPTEPEETLIKEEEDFANGSKGEKAVSPNLHNEKFLSNADGHTSSKKTGVLHDSCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIHKRQSAPGEEDRKWHNQRDAMQRSFYLQRPIMAYPSYHSNQTLSPAPIYPMWGQPGSQMAGVQTWGSPAYPLWHPTESWNWKPYPGMHVDAWGCPLFPPPQAPGFPYNQNIPGLHTPKAVDYRFGMPRSSFEHHPAEEVVDKVVKEAINKPWLPLPLGLKAPSTDSVLAELSKQGISSIPLGNKGSSASKPC 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01268 560 SMART REC_2 18 128 IPR001789 GO:0000160
Phco4g01268 560 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Phco4g01268 560 Gene3D - 18 141 - -
Phco4g01268 560 FunFam Two-component response regulator 311 373 - -
Phco4g01268 560 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 548 IPR044825 GO:0003700|GO:0045893
Phco4g01268 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 312 371 IPR017930 -
Phco4g01268 560 SUPERFAMILY CheY-like 16 134 IPR011006 -
Phco4g01268 560 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Phco4g01268 560 SUPERFAMILY Homeodomain-like 314 371 IPR009057 -
Phco4g01268 560 Gene3D - 311 372 - -
Phco4g01268 560 Pfam Myb-like DNA-binding domain 318 367 IPR001005 -
Phco4g01268 560 FunFam Two-component response regulator-like APRR2 17 142 - -
Phco4g01268 560 NCBIfam myb-like DNA-binding domain, SHAQKYF class 315 370 IPR006447 GO:0003677
Phco4g01268 560 MobiDBLite consensus disorder prediction 187 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01268 Phco-Chr4 10763113 10767753 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phco4g01268 Response_reg 2.9e-08 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01268 4 10763113 10767753 Phco8g00869 8 8852472 8857926 PCT