Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01251 ATGCCTGTTCCGCTTGCCCCCTACCCTCCACCACCTCCATATACGCCTCCACCAAATGGTGCGCAGAGTCAAGTTGTCTGTTCTGGGTGTAGAAACCTTCTACTTTATCCAGTTGGAGCCACCTCAGTGTGCTGTGCTGTTTGCAATGCAGTCACAACTGTGCCACCTCCTGAAATGGCCCAGTTAGTATGTGGAGGCTGTCACACTCTCCTCATGTTCATCCGTGGAGCCACAAATGTCCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGTGAGATGCTACTCAGGTACCAATATGGAGCAAGATCCGTGAAATGTGCCATTTGCAGTTTTGTAACATCAGTCGGGACCTCAACAATCTCCACCACTGAGCAGAAATTCAACACCTAA 432 0.4907 MPVPLAPYPPPPPYTPPPNGAQSQVVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPEMAQLVCGGCHTLLMFIRGATNVQCSCCHTVNLALEANQVAHVNCGNCEMLLRYQYGARSVKCAICSFVTSVGTSTISTTEQKFNT 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01251 143 PANTHER PROTEIN LSD1 15 54 IPR040319 -
Phco4g01251 143 Pfam LSD1 zinc finger 102 126 IPR005735 -
Phco4g01251 143 Pfam LSD1 zinc finger 64 88 IPR005735 -
Phco4g01251 143 Pfam LSD1 zinc finger 27 51 IPR005735 -
Phco4g01251 143 NCBIfam zinc finger domain, LSD1 subclass 99 128 IPR005735 -
Phco4g01251 143 NCBIfam zinc finger domain, LSD1 subclass 61 90 IPR005735 -
Phco4g01251 143 NCBIfam zinc finger domain, LSD1 subclass 24 54 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01251 Phco-Chr4 10593372 10594933 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Phco4g01251 zf-LSD1 8.6e-11 No_clan