Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01244 ATGGCTGCAGAGATTGGCCTAGTCTCCATGACCCAGATCCAAAAATTATCACAATCCCAACACCCCAAAAACCAACAAACTCAACCAAACCCTAACACCACCACCACCACCCCCTCCTCTTGGATGTGGAATCCTAGGGAACAACTGCAGCAGCAAGAAGATGATGATGACTCGTGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGAACCACATGGCCTCCACGGTCCTACACCTGCACCTACTGCAGAAGGGAGTTCCGCTCCGCCCAAGCTCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGTGCACGCCTCCACCAACCCCCTCCTTCCTCCACCACCACCACCACCTCTTCTCTTCCCACTTCTTCACCCTACATCAACATCCCTCCTCAAGACCTTGTTGCAAATGCTGGGTTATGCCTCCTCTACCACTTGCCATCAAGCCCTAGTGCACCACCCTTCCCTAATTCCCCCACTTCTAATGGCCCTTCTTCTTCTCTCTCTCCATCCACTTTTCTCTCTATCTCCTCCTATCCTTCAAACAACTTCCTGATGCAAACTTCCTTTAATTTTCCCAGTGCACCCTCAACTGGTATCAACCCTGCTACTGTTTCCTCTTTCTGCTATAATAACTCTAGCAAAGTGGAACAATCGGTAACTTCTTCCTCTTTTGCTACCGGCCACCTCGAAGAGCTTGATCTAGAGCTCCGTCTCGGGCACAAACCAACACAAACCTCATAA 759 0.5125 MAAEIGLVSMTQIQKLSQSQHPKNQQTQPNPNTTTTTPSSWMWNPREQLQQQEDDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTYCRREFRSAQALGGHMNVHRRDRARLHQPPPSSTTTTTSSLPTSSPYINIPPQDLVANAGLCLLYHLPSSPSAPPFPNSPTSNGPSSSLSPSTFLSISSYPSNNFLMQTSFNFPSAPSTGINPATVSSFCYNNSSKVEQSVTSSSFATGHLEELDLELRLGHKPTQTS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01244 252 Pfam C2H2-type zinc finger 81 105 - -
Phco4g01244 252 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
Phco4g01244 252 MobiDBLite consensus disorder prediction 105 131 - -
Phco4g01244 252 MobiDBLite consensus disorder prediction 13 43 - -
Phco4g01244 252 SMART c2h2final6 81 103 IPR013087 -
Phco4g01244 252 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Phco4g01244 252 PANTHER OS07G0101800 PROTEIN 53 248 - -
Phco4g01244 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Phco4g01244 252 Gene3D Classic Zinc Finger 72 126 - -
Phco4g01244 252 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01244 Phco-Chr4 10515285 10516043 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco4g01244 zf-C2H2_6 2.9e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01244 4 10515285 10516043 Phco4g01244 4 10515285 10516043 ECH
Phco4g01244 4 10515285 10516043 Phco8g00900 8 9237257 9237898 PCT