Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01239 ATGAGCGAACTGGGAACACATTTACACACCTCGATGGATGCATCAGAACCTAGCTGGTTTTCGGATTTCCTGTTGCAGGAAACGGAGGATTGCAACTTCTTCCGACAATGTCAGCTGGAGTTGCTTGAAGACGAGGAAGATTTACTTTCCCTTGAGATAGCAAGTGCCCTGGAAAACTTGCCGCCGCAGCATCAGCAACCTTTCTCTTCGGAGAGTCACACATCGTATTCGGAAACCAGTAATTTGGACAGGCCCGCCAAGCAGCTCAAAACGAATTTCTCCAGTTGGAACCCATCCCCCATCACCACCAAACACTTTTCACCCAATATTTCCTCGTCTACCTCTTCTTCTCCAACCTCCCAGATTATGTTTCCTGTTGAGAACACTCAGCTTCATGGGATTGCTTCTGCTGTCCTGAACCCGCAACAGAACAAAGGTGTTTCAGTTTCACCCCCAGAGACCCGAAAAAGTTCATCGGAAAACCCGAACTACGAAACTAAAAGCCCCAAAAGCCAAGGAAGCTTCAAGACTTCCGGTAACGGTTGGGATCACATCATCGCGGAGAGAAAACGGAGAGAGAAAGTGAGCCAGAGCTTAATTGCTCTCGCTGCTCTCATTCCAGGCTTAAAGAAGATGGACAAGGCTTCAGTGCTGGGAGACGCTATCAGGTACGTGAAAGAGCTTCAAGAGCGTCTGAAAACTCTTGAAGAGAACAAGAACAAAGACGATGTGGGGTCTGTGGTGATGGTGAACAAGGCACGGCTGAGCTACCACGATGGGTGTGGTAGGGAAAGCCTCCCTCGCGTGGAAGCACGAGTGTCAGAGAAGGATGTGCTCATTCGCATCCACTGCCAAAAACAAAAAGGTCTTTTGCTCAAAATACTCGTGGAGATTCAAAACCTTCATCTCTTCGTTGTAAATAGCAGTGTCCTATCTTTTGGGGACTCCATTCTCGACATCACCATTGTTGCTCAGATGGGGACGGAGTACAAGTTGACGATAAATGACCTTGTAAACAACCTATGCAGGGCTACCTTGAAATCCATGTCATAA 1053 0.4777 MSELGTHLHTSMDASEPSWFSDFLLQETEDCNFFRQCQLELLEDEEDLLSLEIASALENLPPQHQQPFSSESHTSYSETSNLDRPAKQLKTNFSSWNPSPITTKHFSPNISSSTSSSPTSQIMFPVENTQLHGIASAVLNPQQNKGVSVSPPETRKSSSENPNYETKSPKSQGSFKTSGNGWDHIIAERKRREKVSQSLIALAALIPGLKKMDKASVLGDAIRYVKELQERLKTLEENKNKDDVGSVVMVNKARLSYHDGCGRESLPRVEARVSEKDVLIRIHCQKQKGLLLKILVEIQNLHLFVVNSSVLSFGDSILDITIVAQMGTEYKLTINDLVNNLCRATLKSMS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01239 350 PANTHER BHLH TRANSCRIPTION FACTOR 65 346 - -
Phco4g01239 350 Pfam Helix-loop-helix DNA-binding domain 184 229 IPR011598 GO:0046983
Phco4g01239 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Phco4g01239 350 Coils Coil 39 59 - -
Phco4g01239 350 SMART finulus 185 234 IPR011598 GO:0046983
Phco4g01239 350 MobiDBLite consensus disorder prediction 139 179 - -
Phco4g01239 350 Gene3D - 177 242 IPR036638 GO:0046983
Phco4g01239 350 Coils Coil 218 245 - -
Phco4g01239 350 MobiDBLite consensus disorder prediction 139 180 - -
Phco4g01239 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 239 IPR036638 GO:0046983
Phco4g01239 350 MobiDBLite consensus disorder prediction 61 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01239 Phco-Chr4 10463603 10466318 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g01239 HLH 6.3e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01239 4 10463603 10466318 Phco8g00905 8 9315585 9316967 PCT