Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01238 ATGATGGAAATCGCGTCCACCAACTACTTCCCTGAACTTGAAATGGAGTATCTTAGCTTTCTTGATCAATACCAGATGGATTCTATTGCATGCCCACTGGATGACTTCGACTTCGAGTCTTTCTCCGGATCCCCAGAGAGCAATTCATCTTATCAGCTCAACTCCGAAAGCACACCAAATTGTTTCCCAGCTGAAAGTCCTGATCTGTCTTTTACCCCTCCAAGACCAACCAAGAGGCTCAAGACATTCAATACCTTCAAAACTTGTGCCAGTCACTTAATTTCCCAGAATGTTTCCGCTTCTCCATCCTCCCAACTTATTTCTTTTGGCCACTTTAATGCTTCACCGCGTGCTTCCCACCAATTTCACAACCTCCATGGGAAGCCTAAAATCGAAAACCCGTCTAGTGAGAACATGGACTTTACAGACTTCGTTTCTCAAGGTTCATATGAGGACAAAAGTTTCCTCAGTTCTGATAATAGAACGGACCAGGTTGGCATAACCACTAGGAACCCAATCCAAGCCCAAGAGCACGTAATAGCTGAAAGAAAACGAAGGGAAAAGCTCAGCCAGAAGTTCATCGCTCTTTCTGCCGTCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCAGTGTTGGGAGATGCTATCAAGTATGTGAAACAACTGCAAGAGCGTGTGCAAACTCTGGAGGAGAAAACAGCGAAGAGCACAACCAGTTCTTCAGTCCTGTTGAAAAGATCTATTCTCTTTGCTGATGATGAAAATTCTGACAGCCACTGCGACCATTCACTCCCTGAAATCGAAGTCAGAGTTACCGGGAAAGACGTACTCATAAGAACTCAAAGCGATAAACACAGTGGGCGCGCGGCAGTGATACTCAGCGAATTAGAAAAGCTTCATTTCATTGTCCAGAGTAGCAGCCTTTTGCCCTTCGGCAATAACAATATTGATGTAACTATTATTGCTCAGATGAAGGAAAACTACATGGCAGCAAAGGATCTTCTAGGAAGGTTACGACAGGCTTTGAAGCAAGTTGATGGGGCCTAA 1047 0.4489 MMEIASTNYFPELEMEYLSFLDQYQMDSIACPLDDFDFESFSGSPESNSSYQLNSESTPNCFPAESPDLSFTPPRPTKRLKTFNTFKTCASHLISQNVSASPSSQLISFGHFNASPRASHQFHNLHGKPKIENPSSENMDFTDFVSQGSYEDKSFLSSDNRTDQVGITTRNPIQAQEHVIAERKRREKLSQKFIALSAVLPGLKKMDKASVLGDAIKYVKQLQERVQTLEEKTAKSTTSSSVLLKRSILFADDENSDSHCDHSLPEIEVRVTGKDVLIRTQSDKHSGRAAVILSELEKLHFIVQSSSLLPFGNNNIDVTIIAQMKENYMAAKDLLGRLRQALKQVDGA 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01238 348 CDD bHLH_AtNAI1_like 175 247 - -
Phco4g01238 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 236 IPR036638 GO:0046983
Phco4g01238 348 Gene3D - 168 238 IPR036638 GO:0046983
Phco4g01238 348 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983
Phco4g01238 348 SMART finulus 179 228 IPR011598 GO:0046983
Phco4g01238 348 Coils Coil 321 341 - -
Phco4g01238 348 Coils Coil 212 239 - -
Phco4g01238 348 PANTHER BHLH TRANSCRIPTION FACTOR 14 342 - -
Phco4g01238 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01238 Phco-Chr4 10449496 10451147 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g01238 HLH 1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01238 4 10449496 10451147 Phco4g01238 4 10449496 10451147 ECH
Phco4g01238 4 10449496 10451147 Phco8g00906 8 9338230 9340174 PCT