Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01237 ATGCGTGTCCTCTTTCTATTTCTGTTTTTCCATCTTCCTCAAACCCTTTCGTTGCCATTCTCAGAATACACTGCTCTGCTCTCTCTTCGTTCAGCCATTACCGATGCCACTCCACCCGTTCTCTCTTCGTGGAACTCCTCCACCTCTTACTGTTCCTGGCTCGGAGTCACGTGCGACTCCCATCGCCACGTCATTGCTCTCAACCTCACTGGACTCGACCTCTCCGGGACTCTCTCCGCCGACGTAGCTCACCTCCCATTCCTCTCCAATCTCTCGCTAGCCACCAATAAGTTCTCCGGCCCCATCCCTCCGGCGCTCTCCTCCCTCTCTGCCCTCCGCCTCCTCAATCTCTCCAACAATGGCTTTAACCAAACCTTCCCTCCGGAGCTCTCGCGCCTCCAGAGCCTCGAGGTCCTCGACCTCTACAACAACAACATGACCGGCGCTCTCCCTCTCGCCGCCGCGCAGATGCTCAACCTCCGCCACTTGCATCTCGGCGGGAACTTTTTCTCAGGCCGGATCCCGCCGGAGTATGGACAGTGGCCGCGCCTCGAGTACCTCGCTGTCTCCGGAAACGAGCTCGAAGGGAAAATACCACCAGAGATCGGGAACCTAACCAGCCTCCGGGAGCTCTACATCGGCTACTATAATACTTACGTGGGCGGCATTCCGCCGGAGATCGGAAACTTGTCAGAGCTGGTGAGACTGGACGCCGCGTACTGTGGTTTGACCGGCGAGATTACAGCGGCGCTGGGTAAGCTGCAGAAGCTGGACACGCTGTTCCTTCAGGTGAATGCGCTATCAGGGCCTCTGACGCCGGAGCTGGGAAACCTGAAGAGCCTGAAATCGATGGATTTGTCTAACAATATGCTCTCCGGCGAGATTCCGGCGACTTTCAGCGAGCTGAAGAATATTACGCTGCTGAACTTGTTCAGGAACAAGCTTCATGGAGCAATACCGGAGTTTATAGGGGAACTTCCGGCGCTGGAAGTGGTGCAATTGTGGGAAAACAACTTCACAGGTAGCATTCCTGAGGGTTTAGGCAAGAACGGGAGGCTGAACGTTCTTGATCTTTCTTCTAACAAATTAACTGGGGCTTTGCCTCCTTACCTCTGTTTTGGGAACACTCTTCAGACTTTGATAACTCTCGAGAATTTCTTGTTCGGTCCAATTCCGGAAGCGCTTGGGAGTTGTGAATCCCTTACTCGGATTCGAATGGGAGAGAACTTTCTAAATGGGTCCATTCCGAAAGGGCTTTTAGGACTTCCCAAACTCACCCAGGTTGAGCTTCAGGATAATTATCTCTCTGGAGGGTTTCCAGAGGCGGGTTCTGTAGCTGTTAATCTTGGTCAGATAACTCTCTCCAACAACCAGCTTTCTGGGCCTTTGCCTCCTTCCATTGGTAACTTCTCCAGCGTGCAAAAGCTCCTTCTTGACGGTAACATGTTTTCGGGTCCGATCCCTCCTCAGATTGGGATGTTGCAACAGCTCTCAAAGATTGACTTTAGTGGCAACAAGTTCTCCGGTCGTATTGCACCTGAAATCAGTCAGTGTAAGTTGTTAACTTTTCTAGACCTTAGCCGGAATGATCTCTCCGGAGAGATCCCAAATGAGATTACAGGAATGAGGATATTGAATTGCCTTAATCTCTCAAGCAATCATTTAGTGGGTAGCATTCCCTCTTCAATATCCTCGATGCAAAGCTTAACTTCTGTTGATTTTTCGTACAACAATCTGTATGGTTTGGTGCCCGGTACCGGCCAATTCAGCTACTTCAACTACACGTCTTTCTTGGGAAACCCTGACCTCTGTGGCCCCTATTTAGGTGCTTGCAAGGATGGGGTTGCCAATGGGGCACATCAACCTCATGCTAAAGGACTCTCGTCTTCTTTGAAGCTTCTACTTGTTGTCGGGTTGCTTTTATGTTCCATTGCTTTTGCTGTGGCGGCAATATTTAAGGCTCGATCACTGAAGAAGGCCAGTGATGCTCGTGCATGGAAGTTGACTGCGTTTCAACGTTTGGAATTCACTGTTGATGATGTTTTGCAGTGCTTGAAGGAGGATAATATTATAGGCAAAGGAGGTGCAGGCATTGTCTACAAAGGGGCTATGCGTAACGGGGATCATGTTGCTGTGAAAAGGCTTCCGGCTATGAGTAGAGGCTCTTCCCACGACCATGGGTTCAACGCAGAGATTCAGACACTTGGGCGAATCCGACACAGGCACATTGTTAGATTGTTGGGTTTCTGTTCAAATCATGAGACTAACCTTTTGGTCTATGAGTACATGCCCAATGGAAGCTTGGGTGAGGTTCTTCATGGAAAGAAGGGGGGTCATTTGCATTGGGACATAAGGTATAAAATTGCCGTTGAGGCTGCCAAAGGGCTTTGCTATCTGCACCATGATTGTTCTCCGCTCATTGTTCACCGTGATGTGAAGTCAAACAACATCCTTCTTGATTCTAATCATGAAGCCCATGTTGCTGATTTTGGGCTTGCCAAGTTCCTGCAAGATTCTGGGACATCTGAATGCATGTCTGCTATTGCTGGTTCATATGGATACATAGCTCCAGAGTATGCCTACACATTGAAAGTTGACGAGAAAAGCGATGTGTACAGTTTTGGCGTGGTTCTTTTAGAACTTATAACAGGCAGGAAACCAGTTGGGGAATTTGGTGACGGTGTGGACATTGTGCAATGGGCAAGGAAAATGACGGACTCTAACAAGGAAGAAGTTCTTAAAGTTCTTGATCCTAGGCTTTCGTCAGTTCCCCTCCACGATGTGATGCATGTTTTCTATGTAGCCATGCTATGTGTTGAAGAACAGGCTGTAGAGAGACCAACTATGCGTGAAGTTGTCCAAATTCTGACAGAGCTTCCAAGGCCACCTGGTTCTAAACAGGAAGACTTAACAGAATCCTCTTTGTCATCATCCAATGCTTTAGAATCTCCATCCACAGCCTCTAAAGATCGTCAAAATCCTTCTCAATCACCACCACCCGATCTTCTGAGCATTTAA 3018 0.4897 MRVLFLFLFFHLPQTLSLPFSEYTALLSLRSAITDATPPVLSSWNSSTSYCSWLGVTCDSHRHVIALNLTGLDLSGTLSADVAHLPFLSNLSLATNKFSGPIPPALSSLSALRLLNLSNNGFNQTFPPELSRLQSLEVLDLYNNNMTGALPLAAAQMLNLRHLHLGGNFFSGRIPPEYGQWPRLEYLAVSGNELEGKIPPEIGNLTSLRELYIGYYNTYVGGIPPEIGNLSELVRLDAAYCGLTGEITAALGKLQKLDTLFLQVNALSGPLTPELGNLKSLKSMDLSNNMLSGEIPATFSELKNITLLNLFRNKLHGAIPEFIGELPALEVVQLWENNFTGSIPEGLGKNGRLNVLDLSSNKLTGALPPYLCFGNTLQTLITLENFLFGPIPEALGSCESLTRIRMGENFLNGSIPKGLLGLPKLTQVELQDNYLSGGFPEAGSVAVNLGQITLSNNQLSGPLPPSIGNFSSVQKLLLDGNMFSGPIPPQIGMLQQLSKIDFSGNKFSGRIAPEISQCKLLTFLDLSRNDLSGEIPNEITGMRILNCLNLSSNHLVGSIPSSISSMQSLTSVDFSYNNLYGLVPGTGQFSYFNYTSFLGNPDLCGPYLGACKDGVANGAHQPHAKGLSSSLKLLLVVGLLLCSIAFAVAAIFKARSLKKASDARAWKLTAFQRLEFTVDDVLQCLKEDNIIGKGGAGIVYKGAMRNGDHVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDIRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNHEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGEFGDGVDIVQWARKMTDSNKEEVLKVLDPRLSSVPLHDVMHVFYVAMLCVEEQAVERPTMREVVQILTELPRPPGSKQEDLTESSLSSSNALESPSTASKDRQNPSQSPPPDLLSI 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01237 1005 Gene3D Transferase(Phosphotransferase) domain 1 763 978 - -
Phco4g01237 1005 MobiDBLite consensus disorder prediction 957 1005 - -
Phco4g01237 1005 SUPERFAMILY Protein kinase-like (PK-like) 681 956 IPR011009 -
Phco4g01237 1005 MobiDBLite consensus disorder prediction 967 1005 - -
Phco4g01237 1005 Pfam Protein tyrosine and serine/threonine kinase 687 956 IPR001245 GO:0004672|GO:0006468
Phco4g01237 1005 Gene3D Ribonuclease Inhibitor 82 347 IPR032675 -
Phco4g01237 1005 Gene3D Ribonuclease Inhibitor 18 81 IPR032675 -
Phco4g01237 1005 SUPERFAMILY RNI-like 67 387 - -
Phco4g01237 1005 Pfam Leucine Rich Repeat 280 302 IPR001611 GO:0005515
Phco4g01237 1005 Pfam Leucine Rich Repeat 159 176 IPR001611 GO:0005515
Phco4g01237 1005 SUPERFAMILY L domain-like 295 611 - -
Phco4g01237 1005 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 79 322 - -
Phco4g01237 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Phco4g01237 1005 SMART LRR_typ_2 326 350 IPR003591 -
Phco4g01237 1005 SMART LRR_typ_2 109 133 IPR003591 -
Phco4g01237 1005 SMART LRR_typ_2 157 181 IPR003591 -
Phco4g01237 1005 SMART LRR_typ_2 566 589 IPR003591 -
Phco4g01237 1005 SMART LRR_typ_2 494 518 IPR003591 -
Phco4g01237 1005 SMART LRR_typ_2 351 374 IPR003591 -
Phco4g01237 1005 SMART LRR_typ_2 278 302 IPR003591 -
Phco4g01237 1005 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 159 951 - -
Phco4g01237 1005 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 654 762 - -
Phco4g01237 1005 Gene3D Ribonuclease Inhibitor 352 615 IPR032675 -
Phco4g01237 1005 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 763 973 - -
Phco4g01237 1005 Gene3D Phosphorylase Kinase; domain 1 650 762 - -
Phco4g01237 1005 ProSiteProfiles Protein kinase domain profile. 685 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01237 1005 SMART serkin_6 685 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01237 1005 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 330 615 - -
Phco4g01237 1005 Pfam Leucine rich repeat N-terminal domain 22 59 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01237 Phco-Chr4 10432101 10435590 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco4g01237 PK_Tyr_Ser-Thr 1.9e-47 CL0016