Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01234 ATGCCCCAGCCATTGTTTCTGTTTTTACTTTTATGTACATTGTGCTCAAGTGGTTTATCCGAAACGCTTTCCCTCCAAAGACAGTCTCGAATTCTACTTCGGGTTAAGAACACCCAGCTTGAAGACAAAAACAAAAGTCTCCAAAACTGGGTATCAAACACAGACCACAACCCCTGCAACTGGACCGGCATTACCTGCGACGCACAAAACCAATCACTTGTCTCCATTGACCTCTCCGAAACTGGAATCTACGGCGAGTTCCCCTTCGGTTTTTGTCACATTCACACCCTCCAAAACCTTTCTCTCGCATCCAATTTTCTCTCCAACTCTGTCTCCCCCAACTCCCTACTACTCTGTTCCCACCTTCGTCTCTTGAACCTCTCCGACAATTTCTTCGTTGGAGACCTGCCGGAATTCCCACCGGAGTTCACCGAACTAAGAGTATTAGACCTTTCGAGAAACAACTTCACTGGCGACATTCCGGGGAGTTTTGGACAAATTCCACGTCTGAGAGTGCTCGTTTTATACGGGAACCTTCTGAGCGGAACGATCCCTCCCTCTTTGGGCAGTCTCAGAGAGTTAACTCGTTTGGAACTAGCTTATAACCCCTTCAAACCAGGACCGTTACCTCCCCAACTAGGAAATCTCTCTAGTCTCGAAACACTGTTCCTCGCTGGTGCTAATCTCGTAGGGGAAATTCCACCTACTATCGGGAACCTCACCTCGCTCAAAAACTTGGATTTATCTCAAAACTGTTTGTCTGGTAACATTCCAAACAGCATTTCAGGTCTGAAAAACGTTGAACAAATTGAACTATTTGAAAACCAGCTTTCCGGTGAATTACCCCAAGGTTTAGGAGACCTCAGTAGTTTAATTCTCTTGGATACCTCTCAGAACGCTCTCACAGGAAAACTACCACACGCAATCGCTTCTTTGCGTCTCTATTCTCTCAACCTGAATGACAACCTTCTCGGGGGGGAAATTCCTGAAAGTTTAGCTTCAAACCCCAACCTGCATCAGCTGAAACTCTTCAACAACAGCTTCACCGGGAAACTCCCACAAGATCTGGGACAAAACTCCGACATACAGGAATTCGATGTCTCAACGAATGACTTCGTGGGAGAGTTGCCAAAGTACCTCTGCAAGAGAAACAAGCTGGAGCGTCTCATAACGTTCGGGAATCGCCTGTCGGGAACGCTCCCTGAGCAATACGGGGAGTGTGGTTCACTTCAGTATGTCAGAATCCAGAACAACCAGTTATCAGGTGAGGTGCCGCCAACGTTTTGGGCCCTTACTGGGCTTCAGTTTCTTGAAATGTCCAACAACAGGTTTCAAGGTTCTGTCTCCGCTTCCATCTCTACGGCACTCACCAAACTCATTTTGTCTGGTAACACTTTTTCTGGCAAATTCCCAACGCGAATCTGCCAACTCCCTCACCTTCTGGAGATTGACGTCAGCAAGAACCGCTTCACCGGTGAAGTTCCCACGTGCGTAACTGGGTTGAAAAAGTTACAGAAACTTAAGATGCAAGAGAACATGTTCACCGGCGAGATACCCAGTAACGTGGCCCTCTGGGCTGATATGACAGAGTTGAATCTGTCGTTTAACCGATTCTCCGGTTCAATCCCGCGGGAACTTGGAAGTTTACAGGATTTGACATACCTTGATCTCGCCGGTAATTCTTTAACGGGGGAAATTCCGGTGGAGTTGACGAACCTCAGACTAAACCAGTTCAACGTATCTGATAACAATCTTTACGGGGAGGTAGCTTCAGGTTTCAACCAGCAAATGTATTTGTCCAGTCTAGGGGGAAACCCGGGTCTGTGCAGCGCCGTTATCAAAACCCTGCCTCCTTGTTCAAAACGCCGGCCGTTTTCTCTGCTTGCGATTGTCGTTTTAGTTGCCTGCGTTTCGCTCCTTGTGGGATCCATGTTGTGGTTCCTGAAGAGCAAGACGCGCGGTAAATCCAAGCGCTCGTATATGTCAACCGCGTTTCAGAGAGTGGGGTTCAATGAAGAAGACATTGTTTCGAACTTAACCGAGGAGAACGTGATTGGGGCAGGGAGTTCGGGTCGGGTCTATAGGGTGAGGCTGAAGACGGGGCAGACGGTGGCAGTGAAGAAGCTGTTCGGCGGTGTACATAAGCCGGACACTGAATTGGTGTTCAGGGCAGAGATTGAGACGTTGGGTAGGATTCGGCATGCGAATATTGTGAAACTGTTGTTTAGTTGCAGTGGTGATGAGTTTAGGGTATTGGTGTATGAGTACATGGAGAACGGGAGCTTAGGGGATGTGTTGCATGGTGAGGAAAGGTGTGGGGAGTTGGAGTGGTCTAGAAGGTTCGCAATCGCGGTGGGTGCGGCTCAGGGGCTGGCTTATTTGCACCATGATTGTGTGCCGCCAATTGTTCACAGGGACGTCAAGAGTAATAACATTTTGCTGGACCATGAGTTTGTGCCAAGAGTCGCAGACTTTGGCCTCGCTAAGACATTGCAGCATGAGACAATCCAGAGTGCTGCTATGTCCAGAGTTGCTGGATCCTATGGATATATTGCTCCAGAGTACGCTTATACAATGAAAGTGACCGAGAAGAGTGATGTGTATAGTTTTGGGGTTGTGCTGATGGAATTGATCACCGGGAAGAGGCCAAATGACTGTTCATTCGGTGAGAACAAGGATATAGTAAAATGGATCACTGAGATTGTTTTATCAGCATCTCCTGAAAGAGGAAGTCGCAATATGGGAGGAGGTAAAGATTATACTATGACCAAGATTGTGGACCCAAGATTGAACCCAACCTCTTGCGACTATGAAGAGGTTAAGAAGGTTTTAAATGTGGCCCTACTCTGCACCTCAGCATTTCCGATTAATAGACCTTCCATGAGGAAGGTGGTTGAATTGCTCAAGGACCACAAACTGCCATGA 2925 0.4766 MPQPLFLFLLLCTLCSSGLSETLSLQRQSRILLRVKNTQLEDKNKSLQNWVSNTDHNPCNWTGITCDAQNQSLVSIDLSETGIYGEFPFGFCHIHTLQNLSLASNFLSNSVSPNSLLLCSHLRLLNLSDNFFVGDLPEFPPEFTELRVLDLSRNNFTGDIPGSFGQIPRLRVLVLYGNLLSGTIPPSLGSLRELTRLELAYNPFKPGPLPPQLGNLSSLETLFLAGANLVGEIPPTIGNLTSLKNLDLSQNCLSGNIPNSISGLKNVEQIELFENQLSGELPQGLGDLSSLILLDTSQNALTGKLPHAIASLRLYSLNLNDNLLGGEIPESLASNPNLHQLKLFNNSFTGKLPQDLGQNSDIQEFDVSTNDFVGELPKYLCKRNKLERLITFGNRLSGTLPEQYGECGSLQYVRIQNNQLSGEVPPTFWALTGLQFLEMSNNRFQGSVSASISTALTKLILSGNTFSGKFPTRICQLPHLLEIDVSKNRFTGEVPTCVTGLKKLQKLKMQENMFTGEIPSNVALWADMTELNLSFNRFSGSIPRELGSLQDLTYLDLAGNSLTGEIPVELTNLRLNQFNVSDNNLYGEVASGFNQQMYLSSLGGNPGLCSAVIKTLPPCSKRRPFSLLAIVVLVACVSLLVGSMLWFLKSKTRGKSKRSYMSTAFQRVGFNEEDIVSNLTEENVIGAGSSGRVYRVRLKTGQTVAVKKLFGGVHKPDTELVFRAEIETLGRIRHANIVKLLFSCSGDEFRVLVYEYMENGSLGDVLHGEERCGELEWSRRFAIAVGAAQGLAYLHHDCVPPIVHRDVKSNNILLDHEFVPRVADFGLAKTLQHETIQSAAMSRVAGSYGYIAPEYAYTMKVTEKSDVYSFGVVLMELITGKRPNDCSFGENKDIVKWITEIVLSASPERGSRNMGGGKDYTMTKIVDPRLNPTSCDYEEVKKVLNVALLCTSAFPINRPSMRKVVELLKDHKLP 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01234 974 FunFam leucine-rich repeat receptor-like protein kinase TDR 757 974 - -
Phco4g01234 974 SMART serkin_6 679 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01234 974 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Phco4g01234 974 Pfam Protein kinase domain 681 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01234 974 SUPERFAMILY RNI-like 75 422 - -
Phco4g01234 974 FunFam Leucine-rich repeat receptor-like protein kinase TDR 309 621 - -
Phco4g01234 974 Pfam Leucine rich repeat 145 203 IPR001611 GO:0005515
Phco4g01234 974 Pfam Leucine rich repeat 218 277 IPR001611 GO:0005515
Phco4g01234 974 Gene3D Ribonuclease Inhibitor 312 624 IPR032675 -
Phco4g01234 974 Gene3D Ribonuclease Inhibitor 207 311 IPR032675 -
Phco4g01234 974 FunFam Leucine-rich receptor-like protein kinase family protein 209 307 - -
Phco4g01234 974 ProSiteProfiles Protein kinase domain profile. 679 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01234 974 ProSitePatterns Protein kinases ATP-binding region signature. 685 708 IPR017441 GO:0005524
Phco4g01234 974 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 142 208 - -
Phco4g01234 974 SUPERFAMILY Protein kinase-like (PK-like) 670 968 IPR011009 -
Phco4g01234 974 SUPERFAMILY RNI-like 352 609 - -
Phco4g01234 974 Gene3D Phosphorylase Kinase; domain 1 653 756 - -
Phco4g01234 974 Gene3D Ribonuclease Inhibitor 23 206 IPR032675 -
Phco4g01234 974 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 345 969 - -
Phco4g01234 974 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 655 756 - -
Phco4g01234 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Phco4g01234 974 Gene3D Transferase(Phosphotransferase) domain 1 757 973 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01234 Phco-Chr4 10404889 10408162 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco4g01234 Pkinase 9.6e-45 CL0016