Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01225 ATGGGTTTTGATCACGATGCCAATACCTCTGGCCTTCACCTCGTTCTAGGGTTATCTTTGACTGCTACAACCACTCCATCCACCAAGCCTCGTGATCATCATCATCATCATCTTTGTGTTATTAAGCCTACGCCAACCAAGCCTTATTCCCCCAATGAACCATCTTTAACGTTGGGTTTGTCTGGCGAGAGCTGCCACCTGGCTAAGCAAGTGCCCAGAAATAACAACGTGGCCAACAACAGTAAAGTTTATTGTGAGGATCCTCTTGACATGTCCAGACAGACATCACCTCACAGCGTGGTTTCCTCTTTCTCAACTGGGAGGGTTGTGAAGAGGGAGAGAGATCTTAGCTTTGAAGAGGTAGAGGCAGAGGCCGAGGCAGAAGAGAGGGTTTCTTCAAGAGTGAGCGACGAAGAAGAAGACGGCTCCAATGCTAAGAAGAAACTCAGACTCACCAAAGAACAATCTGCACTACTAGAGGAGAGCTTTAAACTACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGACAGTTAAATCTACGGCCTCGACAAGTTGAAGTGTGGTTTCAAAATCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGTGAGTTCTTAAAGAAATGCTGTGAAACGTTGACGGACGAAAACAGAAGGTTAAAGAAGGAGCTGCAGGAGCTGAAGGCACTGAAACTAACTCAACCCTTGTACATGCCTATGCCTGCGGCAACACTCACCATGTGCCCTTCGTGCGAGAGGCTCGGTGGTGTGAGCGATAACGCTTCCAATAAAAGCCCCTTCTCCATGGCTCCCAAGCCTCACTTCTACAACCCCTTTGCCAATCCTTCTGCAGCATGTTGA 876 0.4806 MGFDHDANTSGLHLVLGLSLTATTTPSTKPRDHHHHHLCVIKPTPTKPYSPNEPSLTLGLSGESCHLAKQVPRNNNVANNSKVYCEDPLDMSRQTSPHSVVSSFSTGRVVKRERDLSFEEVEAEAEAEERVSSRVSDEEEDGSNAKKKLRLTKEQSALLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLTQPLYMPMPAATLTMCPSCERLGGVSDNASNKSPFSMAPKPHFYNPFANPSAAC 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01225 291 SMART halz 202 245 IPR003106 GO:0006355|GO:0043565
Phco4g01225 291 MobiDBLite consensus disorder prediction 127 149 - -
Phco4g01225 291 MobiDBLite consensus disorder prediction 118 149 - -
Phco4g01225 291 CDD homeodomain 146 203 IPR001356 GO:0003677
Phco4g01225 291 SUPERFAMILY Homeodomain-like 143 210 IPR009057 -
Phco4g01225 291 ProSiteProfiles 'Homeobox' domain profile. 142 202 IPR001356 GO:0003677
Phco4g01225 291 Coils Coil 208 238 - -
Phco4g01225 291 ProSitePatterns 'Homeobox' domain signature. 177 200 IPR017970 GO:0000981|GO:0006355
Phco4g01225 291 Pfam Homeodomain 146 200 IPR001356 GO:0003677
Phco4g01225 291 SMART HOX_1 144 206 IPR001356 GO:0003677
Phco4g01225 291 Gene3D - 152 198 - -
Phco4g01225 291 Pfam Homeobox associated leucine zipper 202 236 IPR003106 GO:0006355|GO:0043565
Phco4g01225 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 16 273 - -
Phco4g01225 291 FunFam Homeobox-leucine zipper protein 18 130 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01225 Phco-Chr4 10331174 10332528 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco4g01225 Homeodomain 4.3e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01225 4 10331174 10332528 Phco8g00919 8 9489731 9490884 PCT