Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01223 ATGAGGTTTAACCACTTTAACCTTTCACCTTTGGTCCCACTGCTTGCACCATGCACGAGACCAACTGACACAGAGAGAGAAGCTGGCACTGCAGAAATGGGAAGGGCTCCTTGTTGTGACAAAGCCAACGTCAAGAAAGGTCCATGGTCACCTGAAGAAGATGCTAAACTCAAGGCTTATATTGAGCAGCATGGCACTGGTGGCAACTGGATAGCCTTGCCCCAGAAAATAGGCCTTAAGAGGTGTGGGAAAAGCTGTCGTCTTAGATGGCTAAATTATCTTCGCCCAAACATCAAACATGGGGGTTTCTCAGAAGAAGAAGACAACATCATCTGCAGCCTTTATGTCAGTATTGGAAGCAGGTGGTCAATTATAGCAGCACAGTTACCAGGGCGAACAGACAATGATATAAAGAACTATTGGAACACTAGGCTAAAGAAGAAGCTTCTTGGCAAACAAAGGAAGGAACAACAGGCTCAAGCTCGCCGTGTCAGCGGCAATCGGCAGAAGCAAGATGTGAAAAGAGAAACCGAGAATTTGATAGTTGCTTCTGAACTCATCAATCAAATTCCCTACTGGTCTGCCGAATATTCTTCTGTGTCTATGCCAGTGACTGATGTTTCCTTTCAACACTATGGTCTGAACAATCAAACATCTCTCAGAAACTTGATGGTTAACAAATTAGAGGGAATTAGATTTTCCAACGATCATCAGCAGCAGCAGCAGCCATACACCAATGCATGTGAAATTCCCTCCCTGCCAAACCAGGTTTTTCCAACCATGGTAAATCATGTGGCCGTGGTGAGTGATGAAAACAATAGCGTCACTTATCAGCCATCAAATGTATTTCAAGGGTTTGAAAACTTCCCCAGTGACTTTTGTGAACTGGTCTGCGTGAACTCCCAACAAATGGATCGGTCAATGGAGAGTTTTAACTACGGAATGGAATCCATGGACGTCATGAGCAATGGTGGTAGCACCAACACAACTTCAACAGAAAGCACTAGTTGGGGTGACATGAGCTCTTTGGTTTACTCACCTTTGGTCTCTGACTATGAAGGTTGCCGACAAGGAAATCCTCGAGATGTTGTAGCTTTCGAAGAGTGCAAGTACTTTGGAATGCAGATGCAATAA 1134 0.4453 MRFNHFNLSPLVPLLAPCTRPTDTEREAGTAEMGRAPCCDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQARRVSGNRQKQDVKRETENLIVASELINQIPYWSAEYSSVSMPVTDVSFQHYGLNNQTSLRNLMVNKLEGIRFSNDHQQQQQPYTNACEIPSLPNQVFPTMVNHVAVVSDENNSVTYQPSNVFQGFENFPSDFCELVCVNSQQMDRSMESFNYGMESMDVMSNGGSTNTTSTESTSWGDMSSLVYSPLVSDYEGCRQGNPRDVVAFEECKYFGMQMQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01223 377 ProSiteProfiles Myb-like domain profile. 41 94 IPR001005 -
Phco4g01223 377 FunFam Transcription factor RAX3 39 100 - -
Phco4g01223 377 SUPERFAMILY Homeodomain-like 43 141 IPR009057 -
Phco4g01223 377 Gene3D - 101 178 - -
Phco4g01223 377 CDD SANT 48 94 IPR001005 -
Phco4g01223 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 94 IPR017930 -
Phco4g01223 377 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Phco4g01223 377 Pfam Myb-like DNA-binding domain 46 94 IPR001005 -
Phco4g01223 377 Pfam Myb-like DNA-binding domain 101 143 IPR001005 -
Phco4g01223 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Phco4g01223 377 FunFam Transcription factor RAX3 102 179 - -
Phco4g01223 377 MobiDBLite consensus disorder prediction 152 174 - -
Phco4g01223 377 CDD SANT 103 145 IPR001005 -
Phco4g01223 377 PANTHER OS09G0431300 PROTEIN 33 326 - -
Phco4g01223 377 SMART sant 99 147 IPR001005 -
Phco4g01223 377 SMART sant 45 96 IPR001005 -
Phco4g01223 377 Gene3D - 39 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01223 Phco-Chr4 10294506 10296464 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco4g01223 Myb_DNA-binding 4.7e-14 CL0123