LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco4g01217	ATGTTTTCTGCTCTTCCCGCTTCCCAACCTCTCCAGGGAAACGCATTCCCCGCGTTGGACTATGCTTTCACGCCCTGGGATGGAGCTCAATTTTTCGACTTCAACCCCACTAGCCCCAACCCCGTCACCTCCAGTTCCGCTTCGGACGACCCCAACCCAACCGCTGCCGACCAAAACCTGGCCTCGGACCAGTCGAACCGGGTCGTGTCCCTCACGGAGGAGCGAAAACGCAGGAGAATGATATCGAACCGGGATTCTGCCCGAAGGTCACGCATGCGTAAACAGAGGCATCTAGAGAACCTACAGAACCAGACGAACCTGTTTAGGGTTGAAAACCGGGAACTGAACAGCGGGTTGCAGTTCCTCCTTCGCCACTATAACCGCGTACGAACCGAAAACGAGTGGCTCTGGTCCGAACGAACCCTGCTCCGCCAAAAACTGGCCAACATAAATCAAATTTTGCTTTTCCAGCAATTGCAATCGTTTTCCACTGCATGGCCCTGCAATATTTTCATGGCAGACTGA	525	0.539	MFSALPASQPLQGNAFPALDYAFTPWDGAQFFDFNPTSPNPVTSSSASDDPNPTAADQNLASDQSNRVVSLTEERKRRRMISNRDSARRSRMRKQRHLENLQNQTNLFRVENRELNSGLQFLLRHYNRVRTENEWLWSERTLLRQKLANINQILLFQQLQSFSTAWPCNIFMAD	174

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco4g01217	174	PANTHER	BZIP TRANSCRIPTION FACTOR 44	38	157	-	-
	Phco4g01217	174	MobiDBLite	consensus disorder prediction	34	68	-	-
	Phco4g01217	174	SUPERFAMILY	Leucine zipper domain	75	129	IPR046347	GO:0003700\|GO:0006355
	Phco4g01217	174	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	73	136	IPR004827	GO:0003700\|GO:0006355
	Phco4g01217	174	MobiDBLite	consensus disorder prediction	69	88	-	-
	Phco4g01217	174	Coils	Coil	84	104	-	-
	Phco4g01217	174	Gene3D	-	73	153	-	-
	Phco4g01217	174	CDD	bZIP_plant_GBF1	76	127	IPR045314	GO:0003700\|GO:0006355
	Phco4g01217	174	SMART	brlzneu	71	135	IPR004827	GO:0003700\|GO:0006355
	Phco4g01217	174	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	78	93	IPR004827	GO:0003700\|GO:0006355
	Phco4g01217	174	MobiDBLite	consensus disorder prediction	34	94	-	-
	Phco4g01217	174	Pfam	bZIP transcription factor	74	133	IPR004827	GO:0003700\|GO:0006355
	Phco4g01217	174	FunFam	BZIP transcription factor	73	124	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco4g01217	Phco-Chr4	10181979	10182503	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Phco4g01217		bZIP_1	3.3e-09	CL0018

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco4g01217	4	10181979	10182503	Phco8g00934	8	9686940	9687638	PCT