Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01205 ATGCAATATATTAGGAAATTTTATAGACATAACAATATGGAATCTGGGTTATTAGTATATATCTCAGGCAGTCTCTCAACCAAAAGACTACGCAAAAGAAAGGATCTTGTCTATGAGATGGATTTGTGGGATGTTTATGTAGGGGTGAAGGGGTTCTTTGCTCAAGTTGGATGTCTTGTGGATGAGATTGAAGTTAATTGGGAATTGAAGTCAATGCTTGATGAGGAAGATCTTGGGTTCTGTTTTTTTTTTCTTCAAATGTTTGAAGAAGGAAATCAAAAATGGACTGCAGAGGAAGAAGCGGCATTGAAAGCTGGAGTTGTCAAACATGGGGCTGGTAAATGGCGCACCATACTTACCGATCCCGAGTTCAGTTCCATTCTGCGCATGCGTTCTAATGTTGATCTCAAGGACAAATGGAGGAACATAAATGTGACGGCAATATGGGGATCAAGGCAGAAGGCAAAGCTTGCTCTTAAAAAGAACCTACTACCATCCCCCAAAATTGACAATAATCACATGGCCTTGAGTACTGTAGTTCAACGTGACAGAGGAGCTGCAGATTCCAAGTCTTTGGCAGTTTCTGGTGGAATATCTCCTAATTCAAAGGAAAAAGTATCAAGGCCACAAAACTTCCAGTTGGATACTCTTATATTAGAGTCTATTATCAAGTTGAAGGAGCCAAAGGGTTCTGACAGGGCAGCAATTGCTTCATATATAGAGGATCAATACTGTTCTACGCCTACCCTCAGAAAGTTACTTTCAACAAAACTCAAGCACATGGTGGCAAGTGGAAAATTAATGAAGGTAAAGCATAAGTACAGGATTGCAACAAATTTAACTATATCTGAGAAAAGAAGATCTTCTTCCTTGTTACTACTGGAAGGGAGGCCCAAAGATTCTCCAAAAACTGAGAAGACTGGTGTCAACATTCTTTCAAAATCCGAAATTGATGCAGAACTATCAAAAATGAAGGGTGTGACACCACAAGAGGCAGCAGCAGCTGCTGCAAAAGCAGTTGCTGAGGCAGAAGCTGCCATTGCCGAGGCTGAGGCAGCAGCTAGGGAGGCAGATGCTGCAGAAGCCGAGGCAGAGGCTGCACGAGTGTTTGCAAAAGCAGCAATAAAGGCACTAAAATGCAAGACACTTCACATTTGGTAA 1161 0.4169 MQYIRKFYRHNNMESGLLVYISGSLSTKRLRKRKDLVYEMDLWDVYVGVKGFFAQVGCLVDEIEVNWELKSMLDEEDLGFCFFFLQMFEEGNQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLLPSPKIDNNHMALSTVVQRDRGAADSKSLAVSGGISPNSKEKVSRPQNFQLDTLILESIIKLKEPKGSDRAAIASYIEDQYCSTPTLRKLLSTKLKHMVASGKLMKVKHKYRIATNLTISEKRRSSSLLLLEGRPKDSPKTEKTGVNILSKSEIDAELSKMKGVTPQEAAAAAAKAVAEAEAAIAEAEAAAREADAAEAEAEAARVFAKAAIKALKCKTLHIW 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01205 386 Coils Coil 333 367 - -
Phco4g01205 386 SMART sant 91 146 IPR001005 -
Phco4g01205 386 Gene3D - 95 170 - -
Phco4g01205 386 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 210 278 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco4g01205 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 148 IPR017930 -
Phco4g01205 386 CDD SANT_TRF 93 144 - -
Phco4g01205 386 SMART h15plus2 208 273 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco4g01205 386 Pfam Myb-like DNA-binding domain 93 143 IPR001005 -
Phco4g01205 386 PANTHER SINGLE MYB HISTONE 4 92 381 IPR044597 GO:0003691
Phco4g01205 386 FunFam Telomere repeat-binding factor 1 90 145 - -
Phco4g01205 386 ProSiteProfiles Myb-like domain profile. 94 144 IPR001005 -
Phco4g01205 386 Gene3D - 206 307 IPR036388 -
Phco4g01205 386 SUPERFAMILY "Winged helix" DNA-binding domain 209 287 IPR036390 -
Phco4g01205 386 SUPERFAMILY Homeodomain-like 92 154 IPR009057 -
Phco4g01205 386 Pfam linker histone H1 and H5 family 215 272 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01205 Phco-Chr4 10054818 10063398 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco4g01205 Linker_histone 1.6e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01205 4 10054818 10063398 Phco8g00949 8 9845205 9849162 PCT