Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01200 ATGGATACAACGTTGTTTGGGGTAGTGAGATTCCAACATCAACTACAACCTCAAGCTCAACCTGATCAAGATCAATCCCTCAACAACTCCACCACCACCAGCAGCTCTCGATCTTCCAGACAACAAAACTATCCCTGCCCACAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTATCCTCGTCTTCTTCCAAGCACTACTATCCCTATCAACCCCACCCTCCCTCCACTACACCCACCACCACCACCGACCTCTCCTTTTCTCCAACCCGCGACGCCGCCTTCCCTTTCCAGCTCTCCGGCAAGTGGGCCCACGACATCCTTCTCGAAACCGCACGTGCCGTCTCCGACAAGAACACCACGCGCCTCCAACAACTGATGTGGATGCTCAACGAACTGGCCTCCCCCTACGGCGACACCGACCAGAAACTGGCCTCCTACTTCCTCCAAGCCTTCTTCAGCCGCATCACTCAAGCCGGGGACCGAACCTATCGAACCTTGGCCTCGGCCTCCGAGAAAACATGCTCCTTCGAATCCACGCGCAAGACGGTGCTGAAGTTCCAAGAGGTCAGTCCTTGGACAACCTTCGGACACGTGGCGTCGAATGGTGCCATCTTGGAAGCCTTGGAAGGCGAGCCCAAACTACACATAGTTGACATCAGCAACACCTATTGCACCCAATGGCCTACGCTCTTCGAAGCCTTGGCCACTCGAAACGATGACACACCGCACCTCCGTCTAACCTCCCTCGTCACCGCCGCCTCCGCACACAAGGTCATGAAGGAAATCGGCGCCAGAATGGAGAAATTCGCCAGACTCATGGGCGTGCCCTTTCAATTCAATGTCGTTTATCACTTAGGCCAACTTTCCGACTTCGATTTCAACGCCTTGGATATCAAAGAGGACGAGGCTTTGGCCATTAACTGTGTCAATACTTTGCATTCGATCTCCGCCCTCGGGAACCACCGTGAAGCGGTGATATCGTCGTTGAGGAGGCTGCAGCCGAGGATCGTGACGGTGGTGGAGGAAGAGGCGGACTTGGACGTGGGATTGGAGGGGTTGGAGTTCGTGAAGGGGATTGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTCGAAGCGTTAGAAGAGAGCTTTCCGCGGACGAGCAACGAGCGGTTGATGCTGGAGCGGGCGGCGGGGAGGGAGGTGGTGGACCTGGTGGCGTGTTCGGCGGCGGATTCGGTGGAACGGCGGGAGAGGGCGGGGCGATGGACGAGGAGGATGCATGGAGGTGGATTCAATACGGTGGCGTTTAGCGAAGAGGTTTGTGATGATGTGAGAGCGTTGTTGAGGAGGTATAGGGAGGGATGGGCAATGGCACAGTGCTCCGACGCCGGAATATTCCTTTCGTGGAAGGACCAGCCGGTGGTGTGGGCCAGTGCATGGAGGTCCTTGACGTAG 1452 0.5565 MDTTLFGVVRFQHQLQPQAQPDQDQSLNNSTTTSSSRSSRQQNYPCPQEDEECFNFFMDEEDLSSSSSKHYYPYQPHPPSTTPTTTTDLSFSPTRDAAFPFQLSGKWAHDILLETARAVSDKNTTRLQQLMWMLNELASPYGDTDQKLASYFLQAFFSRITQAGDRTYRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGEPKLHIVDISNTYCTQWPTLFEALATRNDDTPHLRLTSLVTAASAHKVMKEIGARMEKFARLMGVPFQFNVVYHLGQLSDFDFNALDIKEDEALAINCVNTLHSISALGNHREAVISSLRRLQPRIVTVVEEEADLDVGLEGLEFVKGIEECLRWFRVYFEALEESFPRTSNERLMLERAAGREVVDLVACSAADSVERRERAGRWTRRMHGGGFNTVAFSEEVCDDVRALLRRYREGWAMAQCSDAGIFLSWKDQPVVWASAWRSLT 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01200 483 Pfam GRAS domain family 110 480 IPR005202 -
Phco4g01200 483 MobiDBLite consensus disorder prediction 67 91 - -
Phco4g01200 483 ProSiteProfiles GRAS family profile. 99 480 IPR005202 -
Phco4g01200 483 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 86 473 IPR005202 -
Phco4g01200 483 MobiDBLite consensus disorder prediction 13 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01200 Phco-Chr4 10027771 10029222 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco4g01200 GRAS 3.2e-106 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01200 4 10027771 10029222 Phco4g01200 4 10027771 10029222 ECH
Phco4g01200 4 10027771 10029222 Phco8g00954 8 9894599 9896089 PCT