Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01190 ATGATTGAAAAAAGTTCAAACTCTCTTCAAAATAACAATCAATTAATTCCGCTACCTCCCTCAACAATGTCTTCTTCAATATCAATCAATTCTTCTAGTGACATGAGATCTAATAATTCAAAATCTAGAAGACAAAACAACAATACCTCTTCATCAACAAAAGATTTATGGGAACGTCATTTTTATCAAGGTTATAAAGCAGATGTTTGCATCAATACTAATAATGGTGGCATTGTTTATGCTCATTCTAACATTCTCGCCATGGCTTCTCCTGTATTGAGAGGCATACTAAAGCAAGCAAATCGATGTGGTCGATGGCGAACAATCTCAATCATCGGGGTTCCACATTATGTAGTTCTAATTTTTATTCGATATTTATACACTTATAGTTATGAGAAAGAAGATATGGAGGAATTTGTACTACATTTGTTGGTGTTGTCACATGTATACATGGTTCCTCACTTGAAGTTTGAATGTGGACAAAATTTGGAATTGGGTTTACTCAACATAGATAACTTGGTTGATGTATTTCAACTAGCCTTGTTGTGTGATGCTCCAAGACTTAGTCTCATTTGTCACCGCAAGATACTAAAAAATTTCAAAGTCGTTTCAGAGTCAGAAGGATGGAAAACAATGAAGTTAAGTCACCCACTTCTAGAAAAGGAGATTTTAGAGTCAATGATTGATGAAGAAAATATAAAAAAGGAAAGGATCAGAAAAATGAAGGAAAGAAAGATATATTTACAATTATATGAGGCCATGGAAGCTCTTGTTCATATATGTAAAGATGGTTGTCAAACTATTGGTCCTTATGATAAAGATCTTCAAGCAAATCAACCATGTAAGTATTCAGCATGTAATGGATTGGAGTTGCTTGTTCGTCATTTTGCTGGATGTAAGTTGAGAGTCCCTGGAGGTTGTGTTCATTGTAAGAGGATGTGGCAATTATTTGAGTTACACTCTCGATTATGTGTTAATTCAGAAGAGTGTAGAGTTCCTTTATGCAGGAACTTTAAGCAACGGATATCAGCACAAAGCAAGAAAGATGAAATTAGGTGGAAAATATTGGTTGAAAAGATCTTGAGAACAAAAGGAATTGGGATAGCATCATGTTTTATGCAACAATGA 1128 0.3431 MIEKSSNSLQNNNQLIPLPPSTMSSSISINSSSDMRSNNSKSRRQNNNTSSSTKDLWERHFYQGYKADVCINTNNGGIVYAHSNILAMASPVLRGILKQANRCGRWRTISIIGVPHYVVLIFIRYLYTYSYEKEDMEEFVLHLLVLSHVYMVPHLKFECGQNLELGLLNIDNLVDVFQLALLCDAPRLSLICHRKILKNFKVVSESEGWKTMKLSHPLLEKEILESMIDEENIKKERIRKMKERKIYLQLYEAMEALVHICKDGCQTIGPYDKDLQANQPCKYSACNGLELLVRHFAGCKLRVPGGCVHCKRMWQLFELHSRLCVNSEECRVPLCRNFKQRISAQSKKDEIRWKILVEKILRTKGIGIASCFMQQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01190 375 SMART BTB_4 67 167 IPR000210 GO:0005515
Phco4g01190 375 MobiDBLite consensus disorder prediction 1 52 - -
Phco4g01190 375 Gene3D - 168 242 - -
Phco4g01190 375 SMART TAZ_2 244 336 IPR000197 -
Phco4g01190 375 Gene3D TAZ domain 243 363 IPR035898 -
Phco4g01190 375 FunFam BTB/POZ and TAZ domain-containing protein 2 169 239 - -
Phco4g01190 375 Pfam TAZ zinc finger 251 335 IPR000197 -
Phco4g01190 375 Pfam BTB/POZ domain 66 163 IPR000210 GO:0005515
Phco4g01190 375 SUPERFAMILY POZ domain 45 163 IPR011333 -
Phco4g01190 375 Coils Coil 224 244 - -
Phco4g01190 375 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 36 371 IPR044513 -
Phco4g01190 375 CDD BACK 169 226 - -
Phco4g01190 375 Gene3D Potassium Channel Kv1.1; Chain A 33 167 IPR011333 -
Phco4g01190 375 FunFam BTB/POZ and TAZ domain-containing protein 2 241 365 - -
Phco4g01190 375 SUPERFAMILY TAZ domain 244 342 IPR035898 -
Phco4g01190 375 ProSiteProfiles BTB domain profile. 67 135 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01190 Phco-Chr4 9942012 9944046 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Phco4g01190 BTB 5e-09 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01190 4 9942012 9944046 Phco4g01190 4 9942012 9944046 ECH