Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01178 ATGGCGTTTCGCGTGAGAACTATTTTTCGCCAAAAACTCGGGATCTCAGAATCCACGCGCCAAACCATGTCCAAGGCGCGCGTCTACACTGATGTCAATGTTCTTCGTCCCAAAGAGTATTGGGATTACGAGTCCCTCACCCTTCAGTGGGGTGATCAAGATGATTACGAAGTTGTGCGAAAAGTGGGCAGAGGGAAATATAGTGAAGTTTTTGAAGGCATAAATGTGAATAGCAATGAGCGCTGCATAATCAAGATTCTGAAACCCGTCAAGAAAAAAAAGATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGACCAAATATTGTCAAGCTTCTTGATATTGTGAGAGATCAGCATTCAAAAACTCCTAGTTTGATATTTGAGTATGTCAACAGCACAGATTTTAAAGTTCTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCCTGGATTACTGTCATTCTCAAGGCATTATGCACAGGGATGTCAAGCCTCATAATGTTATGATTGATCATGAGTTACGAAAACTGCGCTTGATTGACTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAACGTTCGTGTGGCTTCAAGATACTTTAAGGGTCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCGTTAGACATGTGGAGTCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAAGAACCTTTCTTTTATGGCCATGACAACCATGATCAGCTTGTAAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCTTATCTTAATAAGTATCATCTGGAACTTGATCCTCAACTTGATGCGCTTGTTGGAAGACACAGTCGAAAACCCTGGTCTAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGGCAATTGATTTTCTTGATAAGCTTCTTCGATATGATCACCAGGACAGGCTAACAGCTAGAGAAGCAATGGCACATCCATATTTCTCTCAAGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACACAGTAA 1068 0.4045 MAFRVRTIFRQKLGISESTRQTMSKARVYTDVNVLRPKEYWDYESLTLQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNICGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01178 355 Pfam Protein kinase domain 56 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01178 355 PANTHER CASEIN KINASE II SUBUNIT ALPHA 17 351 IPR045216 GO:0004674|GO:0006468
Phco4g01178 355 ProSiteProfiles Protein kinase domain profile. 56 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01178 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Phco4g01178 355 SMART serkin_6 56 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01178 355 Gene3D Transferase(Phosphotransferase) domain 1 133 341 - -
Phco4g01178 355 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Phco4g01178 355 FunFam Casein kinase II subunit alpha 133 344 - -
Phco4g01178 355 SUPERFAMILY Protein kinase-like (PK-like) 26 345 IPR011009 -
Phco4g01178 355 Gene3D Phosphorylase Kinase; domain 1 56 132 - -
Phco4g01178 355 FunFam Casein kinase II subunit alpha 42 132 - -
Phco4g01178 355 CDD STKc_CK2_alpha 37 341 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01178 Phco-Chr4 9742615 9747939 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Phco4g01178 Pkinase 1.4e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01178 4 9742615 9747939 Phco4g01178 4 9742615 9747939 ECH
Phco4g01178 4 9742615 9747939 Phco8g00978 8 10177522 10184781 PCT