Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01141 ATGCCTGTGGAGCTCATGATGGGGTATAGGAACGACAGTTTCGCCGAAGAGAATGCGGTTCGTGAAGCTGCGTCGGGGCTAGAGAGCGTCGAGAAGCTCATCAGGTTGCTGTCACGCGCCCAACTGCAACAGCAACAGCAACAACTTCAACAACAATCGCACGCATCCAATTCAAAGTCTTCCATGGAAATTGAATCCGATTACGGAGCTGTCGCTGACGTGGCGGTTTCCAAGTTCAAGAAGGTCATTTCGCTTCTGGGCCGAACCAGAACCGGCCACGCGCGTTTCAGAAGAGCCCCCGTGCCTCCGCCACCTCCTTCCGAACCCAGATTCTACCGTGCAACGCCGCTGCAGCAGATCCCGCCACCCACCGAACACCCTTTCATCCCTAAAAATGGACTGATTGACACAAAGGACTCTTCCAAGACCATCAATTTCTCCTATTCTAATTCCTTCGTCTCCTCCCTCACCGGCGACACCGACACCAAACAGCCCTCTTCCTCGTCGCCTGCGGCGGCGGCTGCGACGGCAGCGCCTTTTCAGATCACGAATCTCTCTCAGGTCTCCTCCGCGGGAAAGCCTCCTCTTTCTTCGTCTTCGTTGAAGAGGAAGTGTAGCTCTGAGAATTTGGGTTCTGCCAATTGTGGGAGTTCCTCTAGCCGATGTCATTGCTCAAAGAAGAGTAGAAAAATGAGGTTGAAGAGGGTGGTGAGGGTACCCGCAATTAGTTTGAAGATGGCTGATATTCCACCAGATGATTATTCTTGGAGGAAATACGGACAGAAACCCATTAAAGGATCTCCTCATCCAAGGGGCTATTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCGCGCAAGCATGTAGAGAGGGCTTTGGATGACCCAGCTATGTTGGTAGTCACCTATGAAGGTGAACACAATCACTCCCTCTCTGCAGTCGAAGCTACTACTAATCTTATCTTAGAATCTTCTTAG 975 0.5169 MPVELMMGYRNDSFAEENAVREAASGLESVEKLIRLLSRAQLQQQQQQLQQQSHASNSKSSMEIESDYGAVADVAVSKFKKVISLLGRTRTGHARFRRAPVPPPPPSEPRFYRATPLQQIPPPTEHPFIPKNGLIDTKDSSKTINFSYSNSFVSSLTGDTDTKQPSSSSPAAAAATAAPFQITNLSQVSSAGKPPLSSSSLKRKCSSENLGSANCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPAMLVVTYEGEHNHSLSAVEATTNLILESS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01141 324 Pfam WRKY DNA -binding domain 252 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g01141 324 SMART WRKY_cls 250 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g01141 324 FunFam WRKY transcription factor 65 234 311 - -
Phco4g01141 324 SUPERFAMILY WRKY DNA-binding domain 247 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco4g01141 324 Coils Coil 39 59 - -
Phco4g01141 324 Pfam Plant zinc cluster domain 202 248 IPR018872 -
Phco4g01141 324 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 21 316 IPR044810 GO:0003700
Phco4g01141 324 ProSiteProfiles WRKY domain profile. 245 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g01141 324 Gene3D WRKY domain 237 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01141 Phco-Chr4 9371419 9372757 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco4g01141 WRKY 4.2e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01141 4 9371419 9372757 Phco4g01141 4 9371419 9372757 ECH
Phco4g01141 4 9371419 9372757 Phco8g01859 8 19655035 19656226 PCT
Phco8g01021 8 10640985 10642253 Phco4g01141 4 9371419 9372757 PCT