Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01123 ATGGGCGACATGTACCACTTTGACAAGAATCTCTCTTCGCAGGACGAAATCTCACTTTTTCTGCGTCAGATTCTCCTCCGTTCATCTCCTTCTTCTTCTTCACCCCACTCCATGCCCGGATCCTGCAACTCCAACGTATCTCACCAAAACGTCAATTCACACACTTCTTTCTCGCCCTCGCAGCTCCAACACGGCAAGATCTCGACCCTTGGTTCCACCGCCTCTTTTGTCTCGGCTTCTGGCGCTTGCGGTTCCTTCAAGGGCCAGACTGCTTCTACTGCAAATGTGTCTTCTTCTTCTGTTTTAGTGAGCGAGAACGAGAATGATGACTATGATTGTGAAAGTGAGGAGGGTGTCGAAGCCTTCGCCGAAGAAGTTCCGACAAAACCTGCTCCTTCTAGGAGTTCATCTAAGAGATCAAGAGCTGCAGAAGTTCATAATTTGTCTGAGAAGCGAAGAAGGAGTAGGATCAACGAGAAAATGAAGGCCTTGCAAAATCTAATTCCGAATTCTAACAAGACGGATAAGGCTTCAATGCTAGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCCATGAGAAATGGGTTGACTTTGCATCCTATGTGCTTTCCAGAAGGCTTGCAGCCACTGCAGTTGTCTCAGATGGGCATGGAACCAAGTGAAAGAAACAGGTCTACCCCTTTAAACATGTCAGCTACTCTGCCTCTCCACCAAGAGAACCCCTTGCACTACACGTCCAATCTACCTAACAAGCACATTCTGCCAAATCAGCCATCAGCACCATATCCTTCATTTATTAACAACCCAGAAACGAAACCTCTTCAACACCAAGGAGGATCTTCTGAGCCAATACGCGGGGAAGACATTTTGCATTACCAGCAACCAAGTGCTATCCATTCAGATGCCAATACACTAGGTGGTTCTCAAGTTGTGAAAGAATTCGAGTCAGGCACAACAGTTTCACTCTCTTTTGACACGCAAACATGTGAACCATGCATTGGCATCGGCAGAAGAGATGAGTCAGCAGTGATCATAAGAAATAGTGAGGCCAACATTGTTGTTACATCACAGTTAAGTAGCTTTCCAGCACACGAGAGTGCAGTGCAGACGGGAAAAGGTGGTGGCAGTGGCAACTCGAAGACCGAGATTTTTGAAGTTTACAAGTCTAGTCTTGCAATGCTTTTTGAATTTTGGTTTCCGCGTAAAAGTAGGAATCCCAATCCTTTAGTTGTGGATTTTGTAATGTTCTCAAAAAGCCTATGGCTCTGGCCTACGTGA 1299 0.4573 MGDMYHFDKNLSSQDEISLFLRQILLRSSPSSSSPHSMPGSCNSNVSHQNVNSHTSFSPSQLQHGKISTLGSTASFVSASGACGSFKGQTASTANVSSSSVLVSENENDDYDCESEEGVEAFAEEVPTKPAPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLTLHPMCFPEGLQPLQLSQMGMEPSERNRSTPLNMSATLPLHQENPLHYTSNLPNKHILPNQPSAPYPSFINNPETKPLQHQGGSSEPIRGEDILHYQQPSAIHSDANTLGGSQVVKEFESGTTVSLSFDTQTCEPCIGIGRRDESAVIIRNSEANIVVTSQLSSFPAHESAVQTGKGGGSGNSKTEIFEVYKSSLAMLFEFWFPRKSRNPNPLVVDFVMFSKSLWLWPT 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01123 432 FunFam Basic helix-loop-helix transcription factor 136 199 - -
Phco4g01123 432 Gene3D - 136 200 IPR036638 GO:0046983
Phco4g01123 432 MobiDBLite consensus disorder prediction 122 153 - -
Phco4g01123 432 Coils Coil 180 200 - -
Phco4g01123 432 MobiDBLite consensus disorder prediction 30 63 - -
Phco4g01123 432 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
Phco4g01123 432 SMART finulus 147 196 IPR011598 GO:0046983
Phco4g01123 432 MobiDBLite consensus disorder prediction 139 153 - -
Phco4g01123 432 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 202 IPR036638 GO:0046983
Phco4g01123 432 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 282 IPR031066 -
Phco4g01123 432 Pfam Helix-loop-helix DNA-binding domain 145 191 IPR011598 GO:0046983
Phco4g01123 432 CDD bHLH_AtPIF_like 142 204 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01123 Phco-Chr4 9126206 9129303 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g01123 HLH 5.2e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01123 4 9126206 9129303 Phco4g01123 4 9126206 9129303 ECH