Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01122 ATGCCCGATCACTCGAGCAGCGGCGCAATGAACGACCAGCTCTCCAACCCCACCTCCATCTTTGGCCTCCGTCTCTGGGTGGTGCTTGGCGTGTGTGTCGGCGCCGCCATCGTCCTCATCCTCTTCCTCATCTCCGTCTGGGTGGCCTTCAAGCGCTCCAAAGCCAACCCCGTTTCCATCCCCGATGTCTCCAAGGAGATCCAAGAAATCCGGGTCGACAACGCCCCCACCCCCAACCCGACCCACCAACCCGACCCTTTTCCAGAACCTGACCCAGTTCCGCCTACCGAGGACGAAACCAATCCCCTCAGCTACCACAGAATCCAGTTCGAGATTGGGAAGAACCACCGAATCTCCTACCCGGAACGTGCTTTGCTTCGCTCATCTTCCAACGACCCTTCCAGTGCTGAGGCTCGCCTCCTCGATCAGGTTCCCACTGTCATTCCCGAAGTTTCTCACTTGGGCTGGGGCCACTGGTACACTCTCCGGGAGCTTGAGGATTCCACCAACGCCTTTGCCCCTGAGAATGTTATTGGTGAAGGAGGTTATGGAATTGTTTATCACGGTATCTTGAACGACAATACTCATGTTGCCATTAAGAATTTGCTCAATAACAGGGGGCAAGCTGAGAAGGAGTTTAAGGTTGAAGTGGAGGCTATAGGACGAGTTCGCCACAAGAATTTAGTCAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGAATGCTTGTTTATGAGTTTGTCGACAATGGTAACTTGGAGCAGTGGCTACATGGCGATGTTGGGCCTTACAGTCCTCTAACATGGGAAATTCGAATGAACATTATTCTGGGAACGGCTAAAGGGCTAACTTATCTACATGAGGGGTTGGAACCAAAAGTTGTTCACCGTGATATTAAATCAAGCAACATTTTGCTCAGTAAGCAGTGGAATGCAAAGGTCTCAGACTTTGGCCTCGCCAAACTCCTTGGCTCTGACAACAGTTATATTACCACCCGTGTCATGGGTACTTTTGGATATGTTGCTCCTGAATATGCAAGTACTGGCATGTTGAATGAACGAAGTGATGTTTATAGTTTTGGAATTCTTATTATGGAAGTTCTTACAGGAAGGAACCCTGTTGATTATAGTCGGCCTCCAGAAGAGGTGAATTTAGTTGACTGGCTCAAGAAGATGGTTAGTAATAGAAATCCAGAGGGGGTCCTGGATCCCAAGCTTCCTGAGAAACCAACTTCAAGGGCACTAAAACGAGCCCTTCTTGTAGCCTTACGTTGCACTGATCCTAATGCACAGAAGCGACCTAAAATGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGGATCGCAGAGCTAGAAGAGATGCGGAACATTTACCAAATGATAGAGTAGAGGATGGGTTGAAAGAGGAGGCAGCTGTATCAGTTGATGATGGCAAGGTTGAAAACGGGAGGTGTGTCAATGAGACAAGAACGAACCCTCAAATAGAAAAGCAATAA 1512 0.4874 MPDHSSSGAMNDQLSNPTSIFGLRLWVVLGVCVGAAIVLILFLISVWVAFKRSKANPVSIPDVSKEIQEIRVDNAPTPNPTHQPDPFPEPDPVPPTEDETNPLSYHRIQFEIGKNHRISYPERALLRSSSNDPSSAEARLLDQVPTVIPEVSHLGWGHWYTLRELEDSTNAFAPENVIGEGGYGIVYHGILNDNTHVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEFVDNGNLEQWLHGDVGPYSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLSKQWNAKVSDFGLAKLLGSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVLTGRNPVDYSRPPEEVNLVDWLKKMVSNRNPEGVLDPKLPEKPTSRALKRALLVALRCTDPNAQKRPKMGHVIHMLEAEDSPYKEDRRARRDAEHLPNDRVEDGLKEEAAVSVDDGKVENGRCVNETRTNPQIEKQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01122 503 CDD STKc_IRAK 178 444 - -
Phco4g01122 503 ProSiteProfiles Protein kinase domain profile. 172 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01122 503 MobiDBLite consensus disorder prediction 73 101 - -
Phco4g01122 503 ProSitePatterns Protein kinases ATP-binding region signature. 178 200 IPR017441 GO:0005524
Phco4g01122 503 FunFam Probable serine/threonine-protein kinase At1g01540 152 247 - -
Phco4g01122 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Phco4g01122 503 Gene3D Transferase(Phosphotransferase) domain 1 248 461 - -
Phco4g01122 503 MobiDBLite consensus disorder prediction 449 489 - -
Phco4g01122 503 FunFam Putative receptor-like serine/threonine-protein kinase 248 458 - -
Phco4g01122 503 Pfam Protein kinase domain 175 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01122 503 SUPERFAMILY Protein kinase-like (PK-like) 148 444 IPR011009 -
Phco4g01122 503 SMART serkin_6 172 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01122 503 Gene3D Phosphorylase Kinase; domain 1 151 247 - -
Phco4g01122 503 PANTHER OS01G0323000 PROTEIN 7 461 - -
Phco4g01122 503 MobiDBLite consensus disorder prediction 449 503 - -
Phco4g01122 503 MobiDBLite consensus disorder prediction 79 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01122 Phco-Chr4 9114997 9117523 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Phco4g01122 Pkinase 1e-46 CL0016