Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01117 ATGACAGGAGTTAGTAGGCTTCTGAATCCACCTCGAAAGGCGTCCCCAGATATAAATGGAGTTGGCGAGTGTGGTGCAAACCCTACTTACTTTCACACCTCCTTCCTCTCCCTTCCCATACTCTGCTCCCAACTTTTCTCCCTTCTCCCCTTTCTTCCATTCCTCCGTGTCTCTCGCAGTTTCAAACTCATGGACGTGGACATACTCAAAACTTCCACGAGTGATACCAGCATGGACATGATGATGATGATGCAAATGGAAAAGTTCCCCGAATTATGTGAACCTTTTTATAACAACACCACTCTTCTCTACCCAGAAAACGAGTTCTTAAGCTCCACCACCACACTACCTGTCTTCTCCAATGTTAACCCAAACGTTATATCTCCACCACACACTTTGATCAATCCACCACCACCTTCCTCCAGTTTTGGTTTCCAACAACCCATGACACCTCCTCCTCTTGAGCCCAACCCTTCGTTTTCGGAGAAGAAGAATTCCGTGGCTGCCATGAGGGAGATGATTTTCCGCGTAGCAGTGATGCAACCTATTCATATAGACCCTGAGTCTATCAAGCCTCCGAAGAGAAGGAACGTGAAGATTTCGAAGGATCCGCAGAGTGTGGCAGCGAGGCACAGAAGGGAAAGGATTAGCGAACGAATCAGGATCCTTCAGAGATTAGTTCCTGGTGGGACCAAAATGGACACGGCTTCTATGTTGGATGAAGCCATACACTACGTAAAGTTCTTGAAGAAACAAGTGCAGACGCTGGAACAAGCGGGAGCAACTAGACCCTTGGGTGTTTTTGGCTTCCCTGGTACTGTGTCCAACGCCACTAATAACGTTAATTATTCTTCTTTTGTCAAGAGTTGCCAGCCGTGTCATATGCTGGGTTCTGCAGCTTCTAAACACATGCTGAGTTGA 921 0.4712 MTGVSRLLNPPRKASPDINGVGECGANPTYFHTSFLSLPILCSQLFSLLPFLPFLRVSRSFKLMDVDILKTSTSDTSMDMMMMMQMEKFPELCEPFYNNTTLLYPENEFLSSTTTLPVFSNVNPNVISPPHTLINPPPPSSSFGFQQPMTPPPLEPNPSFSEKKNSVAAMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATRPLGVFGFPGTVSNATNNVNYSSFVKSCQPCHMLGSAASKHMLS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01117 306 Gene3D - 199 263 IPR036638 GO:0046983
Phco4g01117 306 MobiDBLite consensus disorder prediction 138 158 - -
Phco4g01117 306 FunFam BHLH transcription factor 203 264 - -
Phco4g01117 306 Pfam Helix-loop-helix DNA-binding domain 210 249 IPR011598 GO:0046983
Phco4g01117 306 SMART finulus 206 255 IPR011598 GO:0046983
Phco4g01117 306 CDD bHLH_AtIND_like 201 257 - -
Phco4g01117 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 259 IPR036638 GO:0046983
Phco4g01117 306 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 125 287 IPR045843 GO:0003700|GO:0006355
Phco4g01117 306 MobiDBLite consensus disorder prediction 138 161 - -
Phco4g01117 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 249 IPR011598 GO:0046983
Phco4g01117 306 Coils Coil 239 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01117 Phco-Chr4 9047472 9049190 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g01117 HLH 2.1e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01117 4 9047472 9049190 Phco4g01117 4 9047472 9049190 ECH