Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01105 ATGTCGCAACGATCTGTGCCGGCACCGTTTTTGACGAAGACGTATGAGTTGGTGGAGGATCCCGGGACGAACGAGGTGATATCGTGGAGTGACAGTGGGAACACGTTTGTGGTGTGGAAACATGCGGATTTTGCCAAGGATTTGCTTCCTAAATCTTTCAAGCACAATAACTTCTCCAGTTTTGTTCGCCAGCTCAACACCTACGGATTCCGAAAGATTGTGCCAGATAAGTGGGAATTCGCAAACGAGCATTTCAAACGAGGGAAGAAGGAGCTTCTCTGCGACATCAAACGCCGCAAGACCGTGCCGCAATTGCCGGCGCTTCCACCGGAGGCTGGAAAATCTGGCGGCGATGGTAACTCTCCTTTAAACTCCGGCGGTGGAGACGACGCTGGGACCACTTCTACCTCGTCCTCTTCCTCCGGTTCGAAGAATGCGGGATTGGTGGAAACAAACACAACAGGTTCTCATGAGTTATCGAGCGAGAACCAGAAACTGAAGAAGGATAACGAAACGCTGAGTTGCGAGCTGGCACGTGCGAGGAAGCAGTGCGATGAGCTCGTGGCTTTTCTGAAGAACCGTCTGATGGTGGGTCCTGATCAGATAGATCGCATCATGCGGCAAGGAAGTTGTGGATCTGAGAAGGCGGTAGGTGAAGAAGGTGGTGAAGAATGTTTGAAACTGTTTGGTGTTTGGTTGAAAGAGGATACACTAGCAGACAAAAGAAACAACCACCACAAGAGAGTCCGCGAAGAGCAAATGGGCTTCGGTGGGCCTCGTCTCAAGGAATCCAAGCCCGTTGTTGACTTTGAACCTCTATATCTCATCATGACGAGCAATAAGGTTTGCAACTGA 855 0.5041 MSQRSVPAPFLTKTYELVEDPGTNEVISWSDSGNTFVVWKHADFAKDLLPKSFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGKKELLCDIKRRKTVPQLPALPPEAGKSGGDGNSPLNSGGGDDAGTTSTSSSSSGSKNAGLVETNTTGSHELSSENQKLKKDNETLSCELARARKQCDELVAFLKNRLMVGPDQIDRIMRQGSCGSEKAVGEEGGEECLKLFGVWLKEDTLADKRNNHHKRVREEQMGFGGPRLKESKPVVDFEPLYLIMTSNKVCN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01105 284 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g01105 284 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g01105 284 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g01105 284 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 208 IPR027725 -
Phco4g01105 284 MobiDBLite consensus disorder prediction 118 160 - -
Phco4g01105 284 Coils Coil 156 183 - -
Phco4g01105 284 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g01105 284 Gene3D - 2 101 IPR036388 -
Phco4g01105 284 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g01105 284 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Phco4g01105 284 FunFam Heat stress transcription factor B-4 2 100 - -
Phco4g01105 284 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g01105 284 MobiDBLite consensus disorder prediction 103 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01105 Phco-Chr4 8940428 8941977 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco4g01105 HSF_DNA-bind 1.4e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01105 4 8940428 8941977 Phco4g01105 4 8940428 8941977 ECH
Phco4g01105 4 8940428 8941977 Phco8g01057 8 11118895 11121515 PCT