Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01079 ATGTCATCATCATCGAATTCGCCGTGCGCGGCGTGCAAGTGTCTGAGGCGAAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGGGCTAGCAACGTCGCCAAGCTTCTCAATGAACTCAGCGCCTCGCAGCGAGACGACGCCGTAAAGTCCCTCGCTTACGAGGCCGAGGCTCGTCTCAGGGACCCCGTCTACGGCTGCGTGGGCCTCATCTCCGTCCTCCAACACAAGCTCAGGCAGATCCAGATGGAACTCAACAATGCAAAGAAGGAACTGGCAACATACATCGGTCCCCAAGCTTTTCAAGGCTTACCGGGCCCCATTCTTCAACCGCAACCCAACAACCTTTTTTCCGGTTCCCTGTATGGCAACATGGCGGGGGTGACTGCAGCCACTCACGGTGGGCAGCTGGTGATTCGCGAAGCCCAGTCGCCTCAGCAGCATCAGATCTTGGAGGCCCAGCAGTTGGCCGCGGCTGTGGCGGCCAGGGAGCAGCAGGAGATGTTCAGGAGTTACGAGCATCAACAGCAGCAGGAGTTTCTGCGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTGCTGGTGGGTTCAGCCAGATATCCCCAGTTGCTGCCTCCGCTGATCAGTTGTCTCCTTCGTTGGCTTTGGGATCCTTCGATAACGCTTATCACATGCAGCAACCACAACAGGGAGAGCCTCATCCTCATTCTCATCCTCACAACATTCCTTTTGAGGCTCAGCTTCTGCTCCCTCCACAACAGAAGCAAACACAGCAACAAACACAGCAGTCCCAACTTCCCCTTCACCAGCCACAGTCTGAAAGCGAGGAGTGTAGGAGTCTTGGTCCAACCTGTTGA 906 0.5662 MSSSSNSPCAACKCLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSASQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQMELNNAKKELATYIGPQAFQGLPGPILQPQPNNLFSGSLYGNMAGVTAATHGGQLVIREAQSPQQHQILEAQQLAAAVAAREQQEMFRSYEHQQQQEFLRFSGGFDVGSASAGGFSQISPVAASADQLSPSLALGSFDNAYHMQQPQQGEPHPHSHPHNIPFEAQLLLPPQQKQTQQQTQQSQLPLHQPQSESEECRSLGPTC 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01079 301 Coils Coil 87 107 - -
Phco4g01079 301 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Phco4g01079 301 MobiDBLite consensus disorder prediction 265 301 - -
Phco4g01079 301 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Phco4g01079 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 243 - -
Phco4g01079 301 MobiDBLite consensus disorder prediction 266 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01079 Phco-Chr4 8696010 8696915 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco4g01079 LOB 4.4e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01079 4 8696010 8696915 Phco4g01079 4 8696010 8696915 ECH
Phco4g01079 4 8696010 8696915 Phco8g00575 8 5719276 5720097 PCT
Phco8g00574 8 5711378 5711893 Phco4g01079 4 8696010 8696915 PCT