Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01077 ATGAATGATGATGGCAGTGGACGAACAGAACCGCAGAAGAAGAATATCACCGTTCGTGAAAAGTTATGTTCCAAGACACGTGTTGTTATCGCGTTGGAGATATGTGTGAGGTCAACCATAGCAGACTTTTCACACCACAACACAATACACAAGGTATGGTATGGTATGGTAGTTTGTGATCTGTGGGAGCATACTCTCGCTAACAGAAAATCACCTAATCCACCTCCAGAACACCACCGCGCTTTTATGGAGCTCAGCTTGGACTTGAGTTTGGGCTTTGTCCCCAAACCCATTTCCCTCTTTTTCGCCGAAGTTTCTGGTAACAGAGACAAGCGCGACAAAGTTGCCACGCTTGACGGCTTCGTGCAAAGGTTGGAGGACGAATTGAGGAAAGTTGAGGCCTTCAAACGCGAGCTTCCTCTCTGCATGCTCCTCCTAAACGATGCAATAGCCAGACTGAAGGAGGAAAAAGTAAAGTGTTCAATATCGCAAGATCCACCCACAAGTGAAGAGTTTGTGCCACCGAAAACCATTTCTGGGGGAAAAGAAAATGAAGGATGTGAGAAGAAGAATTGGATGAGTTCAGCTCAGCTTTGGAGCACTCAGAAAATCAAATCGAGGAATGAAGAAAGCGATAGGTCTGTGCCAGAGAACCCAATTGATGGGAATTCGTGTGCCCCGAGGAAGGAGGGTTCACTAATTCCTAGCTTTAGTTTGATGGGTCATGCGTCTGAACTGAGTCATAGCAATTCCAAGAGTGTATGTGGAGATACCAGTTCCGGCTCCTCTTTGCTCCGTGTTGAGGTACAGAGCCAGCCACAACCGCCGCAACATATGCAGCAGAATCCTAGGAAACAAAGGCGGTGCTGGTCGCCGGAGCTTCACCGGCGTTTTGTGGATGCTCTTCAACAACTTGGTGGAGCACAAGTGGCCACTCCTAAACAGATTAGAGAACTGATGCAGGTGGAGAGCCTGACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATGTGAGGAGATTCCCAGTTTCATCAGTTGGACAGGCTGATAATGGCTCATGGATGATCCAAGATCAATGTGGAGATAAATCAAAGGGAAACTTTTCACAGTCTGGTTCTCCTCAAGGTCCTCTCACACCTCTCCTCCTAGGAGGAGGAGGCTCTGCAAAGGGTATCTCAAGCCCTGGACGGAACAGTGTGGATGCAGAAGATGAGCAATCAGATTGCAGGAACTGGAAAGGAGGGCTCCAGCAGCACCTTGAAGCTGATAACCAGAGCCTCTAA 1293 0.478 MNDDGSGRTEPQKKNITVREKLCSKTRVVIALEICVRSTIADFSHHNTIHKVWYGMVVCDLWEHTLANRKSPNPPPEHHRAFMELSLDLSLGFVPKPISLFFAEVSGNRDKRDKVATLDGFVQRLEDELRKVEAFKRELPLCMLLLNDAIARLKEEKVKCSISQDPPTSEEFVPPKTISGGKENEGCEKKNWMSSAQLWSTQKIKSRNEESDRSVPENPIDGNSCAPRKEGSLIPSFSLMGHASELSHSNSKSVCGDTSSGSSLLRVEVQSQPQPPQHMQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVESLTNDEVKSHLQKYRLHVRRFPVSSVGQADNGSWMIQDQCGDKSKGNFSQSGSPQGPLTPLLLGGGGSAKGISSPGRNSVDAEDEQSDCRNWKGGLQQHLEADNQSL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01077 430 Pfam Myb-like DNA-binding domain 287 338 IPR001005 -
Phco4g01077 430 MobiDBLite consensus disorder prediction 190 204 - -
Phco4g01077 430 MobiDBLite consensus disorder prediction 161 233 - -
Phco4g01077 430 MobiDBLite consensus disorder prediction 268 288 - -
Phco4g01077 430 SUPERFAMILY Homeodomain-like 283 343 IPR009057 -
Phco4g01077 430 MobiDBLite consensus disorder prediction 350 380 - -
Phco4g01077 430 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 90 415 IPR044787 GO:0003700|GO:0006355
Phco4g01077 430 NCBIfam myb-like DNA-binding domain, SHAQKYF class 285 340 IPR006447 GO:0003677
Phco4g01077 430 MobiDBLite consensus disorder prediction 268 287 - -
Phco4g01077 430 Coils Coil 118 138 - -
Phco4g01077 430 Gene3D - 284 341 - -
Phco4g01077 430 MobiDBLite consensus disorder prediction 350 430 - -
Phco4g01077 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 282 342 IPR017930 -
Phco4g01077 430 FunFam Myb family transcription factor 284 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01077 Phco-Chr4 8661699 8667171 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco4g01077 Myb_DNA-binding 2.8e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00573 8 5705355 5707447 Phco4g01077 4 8661699 8667171 PCT