Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01075 ATGCAAAACCAACAAGGATATCCATTGATGAGAAAGAAGAGTGAGAAGTATGATAAGAGCAGAGCCCAAAATGGTGCTTACGAGACAACCATTCTAACCGGCGTCATCCACAAAACGAGCTTGTCACTATCACACCTTCCCACTTGGACTCTCTCACTCCATTGCTGGCCGCTCGCAGAATCTTACTCGGCATCTCTCACCGCCCTCGTATTCGTCTGTTTTCAACCGATGGATCGGCCGGCGACCGGCGTCATGCCGATCATGCACGATAGCGACCGTTACGATTTCGTTCGCGATATTGGGTCTGGGAATTTCGGCGTTGCTAGACTTATGAGGGATAAGCAAACGCAAGAGCTTGTCGCCGTCAAGTATATAGAACGCGGAGATAAGGTTGATCAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATTATCATGTTTAAGGAGGTCATTTTAACACCTACCCATCTTGCCATTGTAATGGAATTTGCATCTGGAGGAGAATTATTTGCCCGAATCTGCAATGCAGGGCGTTTTACTGAGGATGAGGCTCGTTTTTTCTTTCAACAACTCATATCTGGGGTCAGCCATTTGCATGCAATGGAAGTCTGTCACCGGGACTTGAAGTTGGAAAACACTTTGTTGGATGGAAGCCCAGCAATCCATTTGAAGATATGTGATTTTGGATATTCCAAGTCTTCAATGCTGCATTCACAACCTAACTCAACTGTGGGAACCCCAGCATATATTGCTCCAGAAGTATTGCTGAAGAAAGAGTATGATGGCAAGATTGCGGATGTATGGTCATGTGGGGTAACCTTATATGTGATGCTTGTGGGATCATATCCTTTTGAAGATCCTAAAGATCCAAAGGATTTCTGGAAGACAATTCAGAGGGTCCTTGCTGTCCAGTATTCCATTCCAGATGATATACAAATATCTCCAGAGTGTGGCCACCTTATCTCAAAGATATTTGTTTCTGACCCTGCAGAGAGAATCACTATTCCTGAAATATTGAAAAATGAATGGTTTCTGAAGAATCTCCCTCCTTACTTGATGGATGAAAATATCATGGGTAAGCAATTTGTAGAGTCGGATCAGCCTATGCAGAGCATTGATACAATTATGCAGATAATTTCAGAAGCTACCGTACCAGCCGCCGGGACCTATTCTTTAGACCAGTTTATGGCTGATAACATAATAGATGATGACATGGATGAATCAGACTCTGACTTCGAGCAAGATGTAGATAGCAGTGGGGAGATAGTGTATGCCAATATAATTTAA 1305 0.4299 MQNQQGYPLMRKKSEKYDKSRAQNGAYETTILTGVIHKTSLSLSHLPTWTLSLHCWPLAESYSASLTALVFVCFQPMDRPATGVMPIMHDSDRYDFVRDIGSGNFGVARLMRDKQTQELVAVKYIERGDKVDQNVKREIINHRSLRHPNIIMFKEVILTPTHLAIVMEFASGGELFARICNAGRFTEDEARFFFQQLISGVSHLHAMEVCHRDLKLENTLLDGSPAIHLKICDFGYSKSSMLHSQPNSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGSYPFEDPKDPKDFWKTIQRVLAVQYSIPDDIQISPECGHLISKIFVSDPAERITIPEILKNEWFLKNLPPYLMDENIMGKQFVESDQPMQSIDTIMQIISEATVPAAGTYSLDQFMADNIIDDDMDESDSDFEQDVDSSGEIVYANII 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01075 434 SUPERFAMILY Protein kinase-like (PK-like) 83 392 IPR011009 -
Phco4g01075 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Phco4g01075 434 Pfam Protein kinase domain 94 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01075 434 SMART serkin_6 94 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01075 434 FunFam Serine/threonine-protein kinase SRK2E 85 169 - -
Phco4g01075 434 ProSiteProfiles Protein kinase domain profile. 94 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01075 434 Gene3D Transferase(Phosphotransferase) domain 1 170 356 - -
Phco4g01075 434 FunFam Serine/threonine-protein kinase SRK2E 170 358 - -
Phco4g01075 434 Gene3D Phosphorylase Kinase; domain 1 77 169 - -
Phco4g01075 434 PANTHER SERINE/THREONINE KINASE 93 377 - -
Phco4g01075 434 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01075 Phco-Chr4 8635515 8642669 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Phco4g01075 Pkinase 2.2e-68 CL0016