Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01071 ATGATCCAAGAACTATTGGGTGCTGCTACTGCTAGCCTCATAGCAGGAGAAAGAAAATTCTCCATTAATAATGGTGGAGGAGGAGGAGGAGGAGGACTTCTACTAACAGCACCCATACCATCTTCTGCTTCTCCATCTCCTTCATGCACAACAACTATCACCACTTCCACTAACGCGGCCACTTCGTCCAACTCAGACAACCAAAATTTGAGGTGCCCTCGTTGTGATTCATCGAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGGTACTGGACCAAAGGTGGTGCTCTCAGGAATGTTCCCATCGGAGGTGGCTGCAGGAAAAGCAAGAGCTCCGGCATGTCCAACTCGGTGGCAAAGCAAGCAGCCACAAAGATGAAAGCAGTGGCATCAGAGCTTGGAAGGCCACAGGGACTCTTTGACCAAGAGCTTCCACAAACCCCAATCTTGTGGGGTTCACAGCAAAATACTCAACTGATGGCTTTACTGAGAGCTACCCAAAACCAAAATCAAAACCCTAACCCTAGTCCCGTGTCAATTGCTGTCAAGAGAGAAGGGAACTCACTGGGATCTCACTCCCACATGGTCTCTGAGCCATTGCTCGCAAATGGGTTGTTGAATAGTACTAGAACTAGTCTAGGCTATGATGGTGTGGGAGAACTTCCTTCACTGGGTCTATTCAGCTCCTTTTGGAGGAATAATCAAGATCAGAATCAGCAACAAAGCAACGGTTTTGTACTTGGAGAACAGCAAAGTGGTGGAGTTCAAGAACTTTACCACAAGCTCAGGTCATCGTCATCAGTTAATTATTGTGGCAGTGATAATTCGCCAGTGTTTCTCGGCAACATGGCTTCTTCCTCTTCTTTGTCCAACATTTTGGAGTCATCTTCAGTTTCTGGCAGCGAATTCGGGTGCTGGAATCCAACCCTTTCTTGGTCTGACCTTCCCACTACAAGCGGAGCATATCCTTAA 1011 0.4738 MIQELLGAATASLIAGERKFSINNGGGGGGGGLLLTAPIPSSASPSPSCTTTITTSTNAATSSNSDNQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKSSGMSNSVAKQAATKMKAVASELGRPQGLFDQELPQTPILWGSQQNTQLMALLRATQNQNQNPNPSPVSIAVKREGNSLGSHSHMVSEPLLANGLLNSTRTSLGYDGVGELPSLGLFSSFWRNNQDQNQQQSNGFVLGEQQSGGVQELYHKLRSSSSVNYCGSDNSPVFLGNMASSSSLSNILESSSVSGSEFGCWNPTLSWSDLPTTSGAYP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01071 336 Pfam Dof domain, zinc finger 68 124 IPR003851 GO:0003677|GO:0006355
Phco4g01071 336 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
Phco4g01071 336 MobiDBLite consensus disorder prediction 42 69 - -
Phco4g01071 336 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Phco4g01071 336 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 61 263 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01071 Phco-Chr4 8609068 8610078 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco4g01071 zf-Dof 2.4e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01071 4 8609068 8610078 Phco4g01071 4 8609068 8610078 ECH
Phco4g01071 4 8609068 8610078 Phco8g01077 8 11376000 11377485 PCT