Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01055 ATGTTTCTTCGCCACCGTACAAATCTCGTTATTGTTCTCACGATCTTGATAGCGTGCACAGCAAGAGCGCAAAACCTCACCTGCAATAGGCAATGCGGGAAGCAGAGTCTTCAGTTCCCTTTCGGGTTCTCCGAAGGTTGTGAAATCAGACTAAACTGTTCCGACAACCAAGTCCAAATTTACGAATTTCTGGTCCAAAACGTTACCAACAGCAACATACTCGTCAATCTCCCTGCAAAATGCAACCGTAGAATGGAATCCATTGAGCCACTCTTCCAAAGAAATTTTGCTCCCTCGGTTAACAACAGCTTTCTGGTGCAAGATTGCAGCGAGGTGTTTGGTGGGTGCGTTATTCCTGCTTCGAATTTTGTGGAAAGCTGCGATGAGAAAAGTGGTAATATCAGTTGCTTTTCGAAACAAGATGGGGCGGATGTTGTGAAATACACAGATTTGAATGAAACTAAGTGTAAGTACTTGTTCTCTGCGGTTTCTTTTGGGCAGAGCAATGAGACTGTGCTGCAGTTTCAGGCGGTCGAGTTGGGGTGGTGGCTTCATGGACAGTGTGATGAATGTTCTGACAACGCTACCTGCACAAAGGTCCCTCTCCAAGGAGGGTTTCGGTGCCAGTGTATCCATGGCTTCACCGGCGACGGCTTCAGAATGGGCACCGGGTGCCGGAAAACTTCGGCTTCAAGTTGCAGTGCTTCAACACTAACTTCCGGGGGATGTGGAAAAGCAACCAAAATCGGTGTTGCTGTTGGAGCAATCATAGCTGGAGCTTTGGTGGTGGCTGGTCTGTTTCTTCTATGCTACTGTGCTAGGCGCCGTTCTATTTGGTTGGGAAAACATACCAGAGTAAAGCGCCAATTACGTGAAGCTGCAGGCAACTCAAGAATACCTTTCTATCCCTACAAAGAAGTAGAAAAAGCCACAAATTCTTTCTCTGAGAAACACAGGCTGGGAACTGGGGCATTTGGTACAGTTTATGCCGGGAAACTGCACAATGATGAATGGGTTGCTATAAAGAAGTTAAGGCAAAGAGACACCAACAGTGCTGACCAAGTCATGAATGAGATCAAGCTCCTTACTTCAGTGAGTCACCCAAATTTAGTTCGCCTCTTAGGTTGCTGCGTAGAGAAGGGAGAGCAGATCCTTGTTTATGAATTTATGCAAAATGGAACACTTTCACAGCACTTGCAGAGAGAGAGGAGTGAAGGACTACCGTGGACAGTAAGACTTACCATTGCTACTGAAACTGCTAACGCTATAGCATATCTTCATTCCGCAATCCATCCCCCAATTTACCACAGAGACATAAAATCTAGTAATATACTTTTGGATTATCACTTCAAATCAAAGATAGCTGATTTTGGGCTTTCTAGGCTTGGCTTGACAGAAACATCTCATATCTCAACCGCTCCACAAGGGACTCCGGGTTATGTCGATCCCCAATATCACCAGAACTTCCATCTTTCTGATAAAAGTGATGTGTACAGTTTTGGAGTGGTCTTGGTAGAGATAATAACTGCCATGAAAGCGGTTGATTTTTCTCGACCTCGGAGTGAGGTTAACTTAGCTGCACTTGCCGTAGATAGGATTAGGAGGGGTGCTGTAGATGAGATCATAGATCCCTTCCTTGAACCACATAGAGATGCTTGGACACTATATTCTATTCATAAGGTAGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACTATGATGGAAGTGGCAGAGGAGCTAGAACACATTAAACGCAGTGGATGGGCAACTATGGAGGAAACTGCCATGGCTTCATCGAATGGGTCCACTTGTTCATCACCTCGCAGTGGAAGTGAGAAGTCACTGAGTGGTATAAAAAAGGCTGGCCAAGGGAGTGCGAGATTGATTGTTCCGCAGAAGATTGAGAGATTTTTTCATTCTGTGGAGGTGAAGGACAGTTCTCCTGTATCAGTGCATGATCCTATTCATTGGTCAAGTGGACACAGCTCACCTTCATCAAACAGCTTGTTGGTAAATGTCATCCCCTGA 2046 0.4536 MFLRHRTNLVIVLTILIACTARAQNLTCNRQCGKQSLQFPFGFSEGCEIRLNCSDNQVQIYEFLVQNVTNSNILVNLPAKCNRRMESIEPLFQRNFAPSVNNSFLVQDCSEVFGGCVIPASNFVESCDEKSGNISCFSKQDGADVVKYTDLNETKCKYLFSAVSFGQSNETVLQFQAVELGWWLHGQCDECSDNATCTKVPLQGGFRCQCIHGFTGDGFRMGTGCRKTSASSCSASTLTSGGCGKATKIGVAVGAIIAGALVVAGLFLLCYCARRRSIWLGKHTRVKRQLREAAGNSRIPFYPYKEVEKATNSFSEKHRLGTGAFGTVYAGKLHNDEWVAIKKLRQRDTNSADQVMNEIKLLTSVSHPNLVRLLGCCVEKGEQILVYEFMQNGTLSQHLQRERSEGLPWTVRLTIATETANAIAYLHSAIHPPIYHRDIKSSNILLDYHFKSKIADFGLSRLGLTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKAVDFSRPRSEVNLAALAVDRIRRGAVDEIIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPTMMEVAEELEHIKRSGWATMEETAMASSNGSTCSSPRSGSEKSLSGIKKAGQGSARLIVPQKIERFFHSVEVKDSSPVSVHDPIHWSSGHSSPSSNSLLVNVIP 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01055 681 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Phco4g01055 681 Gene3D Phosphorylase Kinase; domain 1 276 389 - -
Phco4g01055 681 SUPERFAMILY Protein kinase-like (PK-like) 296 587 IPR011009 -
Phco4g01055 681 CDD EGF_CA 191 217 - -
Phco4g01055 681 Gene3D Transferase(Phosphotransferase) domain 1 390 608 - -
Phco4g01055 681 FunFam Wall-associated receptor kinase-like 20 390 599 - -
Phco4g01055 681 Pfam Protein tyrosine and serine/threonine kinase 317 586 IPR001245 GO:0004672|GO:0006468
Phco4g01055 681 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 625 IPR044652 GO:0004672
Phco4g01055 681 ProSitePatterns Protein kinases ATP-binding region signature. 320 343 IPR017441 GO:0005524
Phco4g01055 681 ProSiteProfiles EGF-like domain profile. 184 220 IPR000742 -
Phco4g01055 681 ProSiteProfiles Protein kinase domain profile. 314 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01055 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Phco4g01055 681 FunFam Wall-associated receptor kinase-like 14 282 389 - -
Phco4g01055 681 MobiDBLite consensus disorder prediction 662 681 - -
Phco4g01055 681 Gene3D Laminin 182 222 - -
Phco4g01055 681 MobiDBLite consensus disorder prediction 603 623 - -
Phco4g01055 681 SMART serkin_6 314 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01055 Phco-Chr4 8468852 8472735 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Phco4g01055 PK_Tyr_Ser-Thr 8.2e-46 CL0016