Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01043 ATGGAAGTGCTTCCTTGTTCTGGTGTTCAATATGCTGGGGAATCTGATTGCAATCAGCAGAGTTCAGGAACTGCTTTTGTATATCAGGAAGAACCTAATTGTGCTGAAAATAGTGAGCAAGTCAAACTGGTAGCTGCTCAACTGAATGAATCATCACATAAAATGCAAGGGCCTCAGATAGAACGGCAATGTGGTTTGTCAACTAATTCAGATTGTCAATGCATTGGAGCTTCATGTTGTGACTGTCAAGTGGATGATCAAAATGACTATTGTGGTTTACATGATTTTGAAGAAGACATTATAAATGAACCTTGCTTGACATCAGACAACTCTATCTCTGTTGTTGATACAATTGAAAGTGAATCACCAAACAACAGTCGGGAAGGAGACTTGTCATGTTCTGAACCCAAGTGGCTTGAGGGGGATGGATCAGTGGCATTGTGGGTCAAGTGGAGGGGGAAGTGGCAGGCTGGTATCCGGTGTGCAAGGGCTGACTGGCCATTATCAACGTTGAAAGCAAAACCAACACATGAAAGAAAGAAATATTTTGTTATATTCTTTCCACACACAAGGATTTATTCTTGGGCTGACATGCTACTTGTTAGATCAATTAATGAGTTTCCCCATCCCATTGCATATAAGACTCATCAGGTGGGGCTGAAAATGGTAAAAGACTTGACTGTTGCACGGCGGTTTATAATGCGTAAGCTAGTTGTTGGCATGCTGAACATGGTCGATCAGTTTCCTTTTAATGCTTTGACAGAAACTGCTTGTGATATGAAGGTCTGGAAGGAGTTTGCCATGGAGGCTTCTCGTTGTAATGGTTATTCTGATTTTGGAAGAATGCTTCTAAAGCTGCATAATAGCATACTGCAGCACCATATAAATGTTGACTGGTTACGACATTCTTATCCCTCTTGGACTGAAAGATGTCAGAGTGCAAATAGTGCTGACTCAGTGGAGCTACTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGGGATCAATACTCTCTCTGATGCACCAGTGCAATCCACATTAACTTCTGAATGGAAAACCTGGAAGCATGATGTAGTGAAATGGTTTTTGGCACCACCTTCCTTATCGATCAGCAAAGACACACAGCAACAGAGTTCTGATGATTTGTACCGAGCAAACCTTCAGGTTTGTAGAAAAAGGGCCAAACTTGAAGTTCGTCGAGCAGATACACATGCTTCACAAGTGGAAATCAAGGCCCAAACTATTGCTCTTCAGGCTGACCCTGGCTTCTTTAAGAATCAGGGCACATTGAGCACATTAGCAGCTGAGTCTTGCAAACAGGAAGGTGTTAGGGAGGTGTCTATGGCAAGTGATTTACCTGGTCATTTGGTCGATAAATGGAATGAAATTGTAGTTGAGAGTACTGATCCCCATTTTTTGCATACCAAAGAAATGGAATCAACACCTACAAAGGAAATGACCATTGCAAAATCTGCAGAATCTGGTAGTAAGAATCGACAATGTATAGCTTATATTGAAGCAAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTGTACTGTTGTGTACATTTATCCTCCCGGTTTTTGGGCAGCTCAACAAAATCTGAAAAGCCTGTTCCACTTGATACTCCTATGTGTGAAGGCACTACTGTTCTGGGTACTAGATGTAAGCATCGTGCCCTACCTGGCTCTCTATTCTGTAAGAAACACCGGCCACATGCCGAGACAGAGCAGATCTCAAATATACCGCAGAATACACTAAAGAGGAAACATGAAGAAAATTATGCTGGTTCTGAGGGTATTCTTTCCAGAGACTTGGTATTAGTAAATGTTGAAAGTCCACTGCAAATGGATACAGTGTCATCCGTTGGTGGTGATTCCGTACATGGAGAAAACAACTTTAATGAGAAGCCCATGGATTCTGAACATGATCATAATGTAATGGAGTCCCTGCACTGTATGGGTTCCCCTCCCTATGATAAGATGAATCCTTGTAGGGAAGGTCCTAAACGGTATTGCTTGTACTGCGATAGTCACCTCCCTAGTTGGCTTAAGCGTGCAAGAAATGGTAAGAGTAGAATAGTATCAAAAGAAGTGTTCACAGAACTTTTGAGGGACTGCAACTCATGGGAGCAAAAGGTACATCTGCATAAAGCATGTGAACTTTTTTACAGGCTTCTTAAAAGCATTTTGTCACTAAGAAACCCTGTTCCAAAGGATGTCCAATTTCAGTGGGCTTTGACTGAAGCCTCTAAAGATTCTAGTGTAGGAGAGTTTTTTAAAAAGTTAGTTCATAATGAAAAGGCCAGAATGAAGTCAATATGGGAATTCAATGATGACATGGATATATTCTCTGTCATGGAAGAACCACCACTCTTGCCATCCACAAACAATGATCACTATGATAAGGAAAATGCCATTAAGTGTAAGCTATGCTCTGCAGAATTTCCTGATGACCAAGAACTTGGTAACCATTGGATGGACAGTCATAAAAAGGAGGCACAGTGGCTGTTTAGAGGCTATGCATGTGCTATTTGTCTGGATTCATTTACTAACAAGAAACTCTTGGAAACACATGTTCAAGAGAGACACCATGTGCAATTTGTTGAACAATGCATGCTTCTCCAGTGCATTCCTTGTGGGAGTCATTTTGGAAATACAGAACAATTATGGCAACATGTTTTATCTGTTCATCCTGTTGATTTTAAACCATCAAAAGCTCCTGAGCCGCAAACTTTATCTACTGGCGAAGATTCTCCAGTAAAACATGATCCGGGTAATTCAGCCCCTTTGGAGAATAATTCTGAGAATACAGGTGGTTTTCGGAAATTTGTTTGCAGGTTTTGTGGATTGAAATTTGATTTGCTACCTGACCTAGGACGACATCACCAAGCTGCTCATATGGGGCCTAATCTGGCAAGCAGTCGCCCTGCAAAGAGAGGAGTTCGATATTATGCATACAGATTAAAATCTGGCAGACTTAGCCGCCCCAGATTTAAAAAAAGTTTGGCAGCAGCATCATACAGGCTTAGAAATAAGGCTAATGCTAACTTAAAGCGAAGCATTCAGGAAACAAATTCACATGGCACAGGAGGAATAACCATACAACCTCACGTTACTGAAACAACAAACATTGGTAGATTGGCAGAACATCAATGCTCAGCTGTTTCAAAGATTTTGTTTTCAGAGATTCAGAAGACGAAACCTCGGCCTAACAATCTTGATATTTTATCAATTGCTCGCTCTGCTTGCTGCAAAGTTAGTCTGGTAGCATCCCTGGAGGAGAAATATGGAATTCTTCCTGAAAAGCTCTATTTGAAGGCAGCAAAACTTTGCAGTGAGCATAATATTTTGGTAAGTTGGCCTCAGGAGGGTTTTATTTGTCCCAGAGGCTGTAATGTATTAAAGGCTCAAGCTTTGCTATCTCCTTTAGATTCTCTTCCTAATAGTTCTGTAATGCCCAAAGCTGTGAATTTATCTGATCCTATAAGTGATGAGTGGGAGGTGGATGAATTTCACTGCATCATCAATTCACAAACTTTAAAGTTAGGTTCACTTCAAAAGGCTGTGGTCTTGTGTGATGACATTAGCTTTGGGAAGGAATCAGTTCCAGTGATTTGTGTAGTAGATCAAGAACTTGCGCATTCTCTTCATATCAATGGCTGTAACGGACAAAATATAAACCCTTCAAGGCCTTGGGAGAGCTTTACCTATGTTACAAAGCCAATGCTTGATCAATCCCTCATTCTTGATTCAGAGAGTCTGCAACTGGGATGTGCCTGTTCATACAGTACCTGCTGTCCTGAAACTTGTGATCATGTGTACCTTTTTGGCAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGATGAGAATGGTCGAATAATCCTGGAGGAAGGTTATCTTGTCTATGAGTGTAATCACATGTGCAGATGCAATAAATCCTGTCCAAATAGAGTATTGCAGAATGGAGTACGAGTCAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCAGTAAGGGCTGGTGAAGCTATACTACGTGGCACATTTGTGTGTGAATACATTGGAGAAGTTTTAGATGTGAAAGAGGCACATGATAGGCGTAGAAGATATGGCACAGAGCATTGCAGTTATTTCTACCACGTCGATGCTCGTGTTAATGATATGAGCAGATTGGTTGAAGGACAGGCCCAGTATGTAGTAGATGCTACTAAATTTGGAAATGTTTCAAGATTTGTCAATCATAGTTGCACACCAAATCTTGTCAATCACCAAGTTCTTGTAGAGAGCATGGATTCTGAACGTGCACATATTGGTTTTTATGCAAATCGAGATATTGCTTTGGGTGAAGAGCTAACATATGACTATCAGTACGAGCTTGTGCTTACAGAAGGATCTCCTTGTCTTTGCGAATCCTTGAAGTGCAGGGGGCGCCTTTACTAG 4488 0.4113 MEVLPCSGVQYAGESDCNQQSSGTAFVYQEEPNCAENSEQVKLVAAQLNESSHKMQGPQIERQCGLSTNSDCQCIGASCCDCQVDDQNDYCGLHDFEEDIINEPCLTSDNSISVVDTIESESPNNSREGDLSCSEPKWLEGDGSVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHERKKYFVIFFPHTRIYSWADMLLVRSINEFPHPIAYKTHQVGLKMVKDLTVARRFIMRKLVVGMLNMVDQFPFNALTETACDMKVWKEFAMEASRCNGYSDFGRMLLKLHNSILQHHINVDWLRHSYPSWTERCQSANSADSVELLKEELFDSILWNGINTLSDAPVQSTLTSEWKTWKHDVVKWFLAPPSLSISKDTQQQSSDDLYRANLQVCRKRAKLEVRRADTHASQVEIKAQTIALQADPGFFKNQGTLSTLAAESCKQEGVREVSMASDLPGHLVDKWNEIVVESTDPHFLHTKEMESTPTKEMTIAKSAESGSKNRQCIAYIEAKGRQCVRWANDGDVYCCVHLSSRFLGSSTKSEKPVPLDTPMCEGTTVLGTRCKHRALPGSLFCKKHRPHAETEQISNIPQNTLKRKHEENYAGSEGILSRDLVLVNVESPLQMDTVSSVGGDSVHGENNFNEKPMDSEHDHNVMESLHCMGSPPYDKMNPCREGPKRYCLYCDSHLPSWLKRARNGKSRIVSKEVFTELLRDCNSWEQKVHLHKACELFYRLLKSILSLRNPVPKDVQFQWALTEASKDSSVGEFFKKLVHNEKARMKSIWEFNDDMDIFSVMEEPPLLPSTNNDHYDKENAIKCKLCSAEFPDDQELGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNTEQLWQHVLSVHPVDFKPSKAPEPQTLSTGEDSPVKHDPGNSAPLENNSENTGGFRKFVCRFCGLKFDLLPDLGRHHQAAHMGPNLASSRPAKRGVRYYAYRLKSGRLSRPRFKKSLAAASYRLRNKANANLKRSIQETNSHGTGGITIQPHVTETTNIGRLAEHQCSAVSKILFSEIQKTKPRPNNLDILSIARSACCKVSLVASLEEKYGILPEKLYLKAAKLCSEHNILVSWPQEGFICPRGCNVLKAQALLSPLDSLPNSSVMPKAVNLSDPISDEWEVDEFHCIINSQTLKLGSLQKAVVLCDDISFGKESVPVICVVDQELAHSLHINGCNGQNINPSRPWESFTYVTKPMLDQSLILDSESLQLGCACSYSTCCPETCDHVYLFGNDYDDAKDIFGKPMRGRFPYDENGRIILEEGYLVYECNHMCRCNKSCPNRVLQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDVKEAHDRRRRYGTEHCSYFYHVDARVNDMSRLVEGQAQYVVDATKFGNVSRFVNHSCTPNLVNHQVLVESMDSERAHIGFYANRDIALGEELTYDYQYELVLTEGSPCLCESLKCRGRLY 1495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01043 1495 SMART set_7 1340 1478 IPR001214 GO:0005515
Phco4g01043 1495 ProSitePatterns Zinc finger C2H2 type domain signature. 950 971 IPR013087 -
Phco4g01043 1495 ProSitePatterns Zinc finger C2H2 type domain signature. 881 902 IPR013087 -
Phco4g01043 1495 ProSiteProfiles SET domain profile. 1340 1472 IPR001214 GO:0005515
Phco4g01043 1495 ProSiteProfiles Zinc finger C2H2 type domain profile. 845 868 IPR013087 -
Phco4g01043 1495 ProSitePatterns Zinc finger C2H2 type domain signature. 813 834 IPR013087 -
Phco4g01043 1495 Gene3D Classic Zinc Finger 797 871 - -
Phco4g01043 1495 Pfam Pre-SET motif 1201 1332 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco4g01043 1495 SUPERFAMILY SET domain 1189 1485 IPR046341 -
Phco4g01043 1495 SMART c2h2final6 948 971 IPR013087 -
Phco4g01043 1495 SMART c2h2final6 879 902 IPR013087 -
Phco4g01043 1495 SMART c2h2final6 845 868 IPR013087 -
Phco4g01043 1495 SMART c2h2final6 811 834 IPR013087 -
Phco4g01043 1495 ProSiteProfiles Post-SET domain profile. 1479 1495 IPR003616 -
Phco4g01043 1495 Pfam SET domain 1351 1471 IPR001214 GO:0005515
Phco4g01043 1495 Pfam Zinc finger C2H2-type, 3 repeats 847 972 IPR040689 -
Phco4g01043 1495 ProSiteProfiles Zinc finger C2H2 type domain profile. 948 976 IPR013087 -
Phco4g01043 1495 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1495 - -
Phco4g01043 1495 Gene3D SET domain 1178 1477 IPR046341 -
Phco4g01043 1495 ProSiteProfiles Pre-SET domain profile. 1261 1337 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco4g01043 1495 MobiDBLite consensus disorder prediction 909 939 - -
Phco4g01043 1495 SMART preset_2 1197 1324 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01043 Phco-Chr4 8362403 8372496 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco4g01043 Pre-SET 1.7e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01043 4 8362403 8372496 Phco4g01043 4 8362403 8372496 ECH