Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01040 ATGTCCCAAGATTTTCAACCAGGAATCTTCAGTTTCCCGAATGGGTTGGAGAGAGGAAGGGTGAGTCCGCAGCAGCAGATCCGGAGGGACAAAGTAAGGTTACAAGGAGAGTTCGAGGCAGCGCCATTGGTAGGGATAGAGGAAGAGGAACCGGTGTACGAGACTGCCGGGATGTTGTCGGAGATGTTCAATTTTCCGCCTACGGCTGCGGCGGAATTGCTGGAGCAGCAGCCTGTGACGGCCACGTTTAGGGCGGCGAGGCAAGTTGGAGAGTGGTACGGAAACAGACAAGGGGTGAATATGATGATGGGTGGATTGGGGGATTCGAAGAACCAAAACGGTGTGAATAACAACCAGCATCAACCACAGCACCAGATTTCAAGCATTAATGCTGACTCAGCAGCTGCCATGCAGCTTTTTCTGATGAACCCTCAAACGAGGTCGCCTTCCCCTCCTCAAAGCCATGCCACCCCTTCTTCAACACTCCACATGTTGCTTCCCAATCCTTCTTCCAATTCCCTCCAAGGTTTCACTGGTTCGGCCGTGGGAGGGTCTTTTGGACAATTCACATGGGTTCCTGAGAGTACTCATCAACAAGGAGGCGTGATGGAAGGGCAAGGTCTTTCGCTGTCGTTGTCTTCTTCACTGGAAGCAGCGAAAGCCGAGGAATTGAGGATGGGGGATAGTGGTTTTCTATTTTACAATCATCAACAAGGTGGTGGTGTTGGAGCTGGTGGTTCTTCTTCTTCCACAGTTCAATTTCCGTACAAGAACAACAGTCATCAACAAGCATTGCATTTGCAAGGGGTGATAGGACACGACAACAACCAGCAGGGACATGTTGGGTTCGGGTCATCCTCGTTAGGTGTAGTTAATGTTCTGAGAAATACAAAGTATGTGAAGGCTGCACAAGAGTTGCTTGAAGAGTTTTGCAGTGTTGGGAGGGGTCAGTTTAAGAAGAGCAAGTTGAATAGGCAGAATTCAAACCCTAATTCAAATCCCGATGGTGGTGGTTCTTCGCCTTCCTCAAAAGATGCTGCTATTCCCCCTCCTCCTCCTCCTCTGTCAGCTGCTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCAATGCTGGACGAGGTGGATAGGAGATACAACCATTACTGCGAGCAGATGCAAATGGTGGTGAACTCATTTGACCTGATGATGGGTTTTGGTGCGGCAGTTCCATACACAGCACTGGCGCAGAAAGCAATGTCTCGGCATTTCCGGTGTCTGAAGGACGCAATAACAGCGCAGCTGAAGCAAAGTTGTGAGCTACTAGGAGAGAAAGAAGGGGCGGGGGCCTCAGGTTTGACCAAGGGTGAGACCCCAAGGCTTAAGGTGCTAGAGCAAAGCCTAAGACAGCAGAGAGCCTTCCACCAGATGGGGATGATGGAACAAGAAGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGATCTGTCAACATTTTGAGAGCTTGGCTTTTCGAACATTTTCTTCATCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGACTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTAGAAGATATGTACCAACAAGAACTTAAAGAAGCAGAGAATACAGAAGAGAGAGAAAATAACCAAAGCAACAACAGCAATACCAGTGGGAACCAAGCACAAACTCCAAGCACGCCAGGAGCAGCTACAACATCAACAGCAACAACAGCTGCACCACCAACAATTACCACAACAAAGCCAACAGGGAAAAAATCCAATATCAATGCTACCGAAAGCGACTCATCACTTGTTGCAATGAATAGACAAGGCTTCTCGGAAAACCAAGGAAAGCAGTGCACCACCACCTCCACCACTATCATGGCCTCCGTCAGCGCCACCACCTCTGATATTGCACCACCCGGATCACAGTGCCTTGACTCAGATCTGCCCCCACACAGATTAATGGCCACTGATGACACGTGTCGCTTGGTCACAGCAGATTTTGGGACCACATCTGCAAGTGCTGACATTGGATCCACACTCATTAGATTTGGGACCACAGTTGGTGACGTGTCACTCACCCTAGGGCTTCGCCATGCCGGGAACATGCCAGAGAAAACTCCTTTCTCTGTTAGAGACTTTGGAGCCATTTAA 2196 0.4932 MSQDFQPGIFSFPNGLERGRVSPQQQIRRDKVRLQGEFEAAPLVGIEEEEPVYETAGMLSEMFNFPPTAAAELLEQQPVTATFRAARQVGEWYGNRQGVNMMMGGLGDSKNQNGVNNNQHQPQHQISSINADSAAAMQLFLMNPQTRSPSPPQSHATPSSTLHMLLPNPSSNSLQGFTGSAVGGSFGQFTWVPESTHQQGGVMEGQGLSLSLSSSLEAAKAEELRMGDSGFLFYNHQQGGGVGAGGSSSSTVQFPYKNNSHQQALHLQGVIGHDNNQQGHVGFGSSSLGVVNVLRNTKYVKAAQELLEEFCSVGRGQFKKSKLNRQNSNPNSNPDGGGSSPSSKDAAIPPPPPPLSAADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKQSCELLGEKEGAGASGLTKGETPRLKVLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAENTEERENNQSNNSNTSGNQAQTPSTPGAATTSTATTAAPPTITTTKPTGKKSNINATESDSSLVAMNRQGFSENQGKQCTTTSTTIMASVSATTSDIAPPGSQCLDSDLPPHRLMATDDTCRLVTADFGTTSASADIGSTLIRFGTTVGDVSLTLGLRHAGNMPEKTPFSVRDFGAI 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01040 731 Gene3D - 483 545 - -
Phco4g01040 731 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 155 565 - -
Phco4g01040 731 SMART prehox3 288 428 IPR006563 -
Phco4g01040 731 MobiDBLite consensus disorder prediction 560 614 - -
Phco4g01040 731 SMART HOX_1 480 544 IPR001356 GO:0003677
Phco4g01040 731 MobiDBLite consensus disorder prediction 321 360 - -
Phco4g01040 731 MobiDBLite consensus disorder prediction 551 614 - -
Phco4g01040 731 MobiDBLite consensus disorder prediction 106 125 - -
Phco4g01040 731 MobiDBLite consensus disorder prediction 321 340 - -
Phco4g01040 731 Pfam Homeobox KN domain 497 536 IPR008422 GO:0003677|GO:0006355
Phco4g01040 731 Coils Coil 543 566 - -
Phco4g01040 731 FunFam BEL1-like homeodomain protein 4 483 545 - -
Phco4g01040 731 SUPERFAMILY Homeodomain-like 482 547 IPR009057 -
Phco4g01040 731 CDD homeodomain 480 541 IPR001356 GO:0003677
Phco4g01040 731 Pfam Associated with HOX 293 427 IPR006563 -
Phco4g01040 731 ProSiteProfiles 'Homeobox' domain profile. 477 540 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01040 Phco-Chr4 8335364 8342042 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco4g01040 POX 4.4e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01040 4 8335364 8342042 Phco4g01040 4 8335364 8342042 ECH
Phco8g00516 8 5089065 5095969 Phco4g01040 4 8335364 8342042 ECH
Phco4g01040 4 8335364 8342042 Phco8g00516 8 5089065 5095969 PCT