Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01039 ATGGGTTGGTTTAGAAAGTTGCTTAAAGGTTCCGATCATATTTCACGTGGACAATACCAAGGCAAATATGGAGAAGACAGAATTTGGGATAACCACCGTAGTTCAATGGATGACTTAACGGATATAGAGAAAGAAGACATTGACCGTGCAATTGCACTATCTCTGTCAGAGGAGGATCATCTTAAAGAGAAAAAAGTTGTTGAGGATGACTCTCAATCTGAAGATGATAAACTCTGTGAAATTGACGATGAGGAAGATGAATATCTTGCTAAAATTCAACAAGAAGAAGATGAACGTCTTGCTAAAGTTCAACAAGAAGAAGATGAACAGATTGCTAAAATTCAACAAGAAGAAGAACGTCTTGCTAAAATTCAACAAGATGAAGTTGAACGTCTTGCTAAAGCTCAACTTGAGGAAGACGAGCAACTTGCTAGGGCAATTCAAGAAAGTTTGACCCTTGGTTCTCCTCCTCGATCTGACAATGATTCTTCATTTCTATCATATCCTCACCTCTTTCCCCCTGGACACAGAATCTGTGCTAGGTGCAAGACTGAGATTGGCCAAGGAAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCAGAATGCTTCTGCTGCCATTCATGTCGTTTGCCAATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGGAGAAGCATCATCCCAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAGTACTGCCCATCTCATGAGCTTGATGGCACTCCTCGTTGCTGTAGCTGCGAAAGAATGGAGCCAAGGGATGCAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTGGTCGAGAGACAAGCTCTGAATGAGGCCATGGAGGGAGAAAAAAATGGTCATCACCACTTACCTGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTCTCTACTATTTCAAGGAGGCCAAAGATCGGAGCCGGCTACCAAGTCATCGACATGATAACTGAACCTTATAAGCTGATCCGTCGTTGTGAAGTGACAGCCATTCTAGTTTTGTATGGCCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCACGAGATGATGCATGCATGGCTTAGGCTTAAAGGTTATCCTAACCTCAGTCCGGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGCTGTATACGGGATCTGGGAATGGCGGTGCATCATCATCCTCGTCTTCATCTTCATCATCACCTTCCTCCTCTTCCGCATCATCAAAGAAGGGTAAACGTTCCGATTTAGAGAAGAAACTCGGTGAGTTTTTTAAACACCAGATTGAGTCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATCGGGTAACCAAGCAATGCTCAAGTATGGCCTCAAAAGCACCCTTGACCATATCCATATGACAGGAAGTTTTCCATATTGA 1647 0.4202 MGWFRKLLKGSDHISRGQYQGKYGEDRIWDNHRSSMDDLTDIEKEDIDRAIALSLSEEDHLKEKKVVEDDSQSEDDKLCEIDDEEDEYLAKIQQEEDERLAKVQQEEDEQIAKIQQEEERLAKIQQDEVERLAKAQLEEDEQLARAIQESLTLGSPPRSDNDSSFLSYPHLFPPGHRICARCKTEIGQGRFLSCMGGVWHPECFCCHSCRLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVSTISRRPKIGAGYQVIDMITEPYKLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSELYTGSGNGGASSSSSSSSSSPSSSSASSKKGKRSDLEKKLGEFFKHQIESDTSSAYGDGFRSGNQAMLKYGLKSTLDHIHMTGSFPY 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01039 548 Pfam Protein DA1 328 543 IPR022087 -
Phco4g01039 548 FunFam Protein DA1-related 1 173 232 - -
Phco4g01039 548 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 262 - -
Phco4g01039 548 MobiDBLite consensus disorder prediction 468 490 - -
Phco4g01039 548 MobiDBLite consensus disorder prediction 468 495 - -
Phco4g01039 548 SMART lim_4 178 230 IPR001781 -
Phco4g01039 548 ProSitePatterns LIM zinc-binding domain signature. 179 213 IPR001781 -
Phco4g01039 548 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 138 151 IPR003903 -
Phco4g01039 548 Pfam LIM domain 179 234 IPR001781 -
Phco4g01039 548 PANTHER PROTEIN DA1-RELATED 2 3 548 IPR045218 -
Phco4g01039 548 CDD UDM1_RNF168_RNF169-like 87 145 - -
Phco4g01039 548 SMART uim 42 61 IPR003903 -
Phco4g01039 548 SMART uim 138 157 IPR003903 -
Phco4g01039 548 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 204 - -
Phco4g01039 548 Coils Coil 89 135 - -
Phco4g01039 548 CDD LIM_DA1 179 231 - -
Phco4g01039 548 ProSiteProfiles LIM domain profile. 177 237 IPR001781 -
Phco4g01039 548 Gene3D Cysteine Rich Protein 173 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01039 Phco-Chr4 8309297 8314521 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco4g01039 DA1-like 1.6e-105 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01039 4 8309297 8314521 Phco4g01039 4 8309297 8314521 ECH
Phco8g00514 8 5046116 5050320 Phco4g01039 4 8309297 8314521 ECH
Phco4g01039 4 8309297 8314521 Phco8g00514 8 5046116 5050320 PCT