Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01033 ATGCATCTCTTTCCCTTCACTCTCATAATCCTTTTCACCGTTTTGATCCACAACTTCTCTCTGATTCTGGGGCAACAACCTTATATTGGTTTAGGCACAGTAGCATGCCCTAAAAGTGGTAACAAAAACTCTATTCGTGGTTACACTTGTAATGGTGCAAACAGCTGCCAAGCATTCCTTACTTTCAGATCTCAACCCATTTACAACTCTGTCTCCACAATATCTACTTTATTGGGTTCTGACCCGTCCCAACTTGCTCAAATAAATTCCGTTTCCCTGAATGACACCTTCCAAACAAACAAGTTGGTGCTTGTTCCGGTTAACTGTTCCTGTGCAGGTGAGTATTATCAAACAAACACATCCTATGTGTTCCAGAATTCAGAAACTTACTTCTTGATTGCTAACAACACTTTCGAGGGCCTCACTACATGTCAAGCTTTGCAGAATCAAAACCACAACCCAGCAAACATATACCCCGGTAGAAAACTTCTAGTGCCTCTCAGATGTGCTTGTCCCACCAAAAACCAAACCGAGAAAGCCATTAGGTACCTCTTAAGCTACTTGGTGAAGCCGGATGATTCTGTTTCAGTCATCGCTGAGAAATTTGGTGTTGGCACTATGACCACTCTTGAAGCTAATAGCCTCACTTTGACACAATCCACTATCTATCCCTTTACTACACTTCTAATTCCCCTTCACGATAAGCCCTCAAGTTCTCAGACCGTTTCTCCAGCTCAACTTACGCCAACCCCCTCATCACCCCCCTCTTCTCATCACAAGAAAACATGGGTGTATGCTGTTGTTGGAGGTGTTGCCTTGACATCAGCTCTCTGTGCTATCATTTTCTTCACACGCTATCGCAAAAATAGAAACAAAGATGAGTCAGCGGTAGTGTCCAAGAGTTTTGAGGCAACTAAGAAAAAACCACAAAGGAGGGTAAATGAAAAATTGTCAGAGATCATATCTGGCATAGCTCAATCGTTCAAGGTGTATGATTTTGAGGAACTAAAGCGAGCAACAGATAACTTTAGTCCTAGCTACTGGATCAAAGGGTCTGTTTATCGCGGTGTGATTAATGGTGATTTGGCAGCAATTAAAAAGATCGAAGGTGATGTGACAAAGGAGATGGAGATACTGAACAAAATCAACCATTCCAATGTTATACGCCTTTCCGGGGTTAGCTTCCACGAGGGGCGTTGGTACCTTGTTTTTGAGTATGCTGCTAATGGAGCTTTGAATGAATGGATCTACTTCAACAACGTGGATGGGAAGTTTCTGAGTTGGACGCAGAGAATACAGATTGCATTGGATGTGGCCACAGGACTTGATTATCTTCACAGTTTCACTTCTCTTCCTTATATCCACAAGGATATCAAGAGTAGTAACATTCTACTGGATGGTGACTTCAGGGGAAAGGTTGCAAATTTAAGCCTTGCTAGGCGTGTTGAAGGAGGGGACGACCAATTTCCTGCCACCAGGCACATTGTTGGGACAAGAGGCTACATGGCTCCCGAGTATTTGGAACATGGTCTTATATCTACGAAGCTTGATGTGTATGCTTTTGGGGTAGTGATGCTGGAAATGATCACAGGAAAGGAGGTTGCTGCTATTGTAACAGAAGACGAGACAAACCTGTCACATGTTTTACGTGTCATGCTTGGTGAGGAAAGTGGCCAGGAGAGGTTGAAGGAGTTTGTGGATCCCTCTTTGCAAGAAAATTGTCCATTTGAACTTGCTATGTTTGCGATTGAAATGATTGATAATTGCATATCGAATGATCCAGCAAGTCGTCCTAGTGTGCATGAGATTGTGCAATCTCTGTCAAGAACCCTGAATTCATCACTGAGTTGGGAAAGGTCAATGAATGTCCCACGAAACTAA 1881 0.4301 MHLFPFTLIILFTVLIHNFSLILGQQPYIGLGTVACPKSGNKNSIRGYTCNGANSCQAFLTFRSQPIYNSVSTISTLLGSDPSQLAQINSVSLNDTFQTNKLVLVPVNCSCAGEYYQTNTSYVFQNSETYFLIANNTFEGLTTCQALQNQNHNPANIYPGRKLLVPLRCACPTKNQTEKAIRYLLSYLVKPDDSVSVIAEKFGVGTMTTLEANSLTLTQSTIYPFTTLLIPLHDKPSSSQTVSPAQLTPTPSSPPSSHHKKTWVYAVVGGVALTSALCAIIFFTRYRKNRNKDESAVVSKSFEATKKKPQRRVNEKLSEIISGIAQSFKVYDFEELKRATDNFSPSYWIKGSVYRGVINGDLAAIKKIEGDVTKEMEILNKINHSNVIRLSGVSFHEGRWYLVFEYAANGALNEWIYFNNVDGKFLSWTQRIQIALDVATGLDYLHSFTSLPYIHKDIKSSNILLDGDFRGKVANLSLARRVEGGDDQFPATRHIVGTRGYMAPEYLEHGLISTKLDVYAFGVVMLEMITGKEVAAIVTEDETNLSHVLRVMLGEESGQERLKEFVDPSLQENCPFELAMFAIEMIDNCISNDPASRPSVHEIVQSLSRTLNSSLSWERSMNVPRN 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01033 626 MobiDBLite consensus disorder prediction 236 259 - -
Phco4g01033 626 Pfam Protein kinase domain 353 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01033 626 Pfam LysM domain 122 166 IPR018392 -
Phco4g01033 626 Pfam LysM domain 187 231 IPR018392 -
Phco4g01033 626 FunFam PTI1-like tyrosine-protein kinase 3 407 621 - -
Phco4g01033 626 Gene3D LysM domain 171 246 IPR036779 -
Phco4g01033 626 Gene3D Transferase(Phosphotransferase) domain 1 407 620 - -
Phco4g01033 626 SMART LysM_2 186 231 IPR018392 -
Phco4g01033 626 SMART LysM_2 121 166 IPR018392 -
Phco4g01033 626 SMART serkin_6 348 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01033 626 ProSiteProfiles LysM domain profile. 185 230 IPR018392 -
Phco4g01033 626 Gene3D Phosphorylase Kinase; domain 1 313 406 - -
Phco4g01033 626 ProSiteProfiles LysM domain profile. 120 165 IPR018392 -
Phco4g01033 626 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 8 619 - -
Phco4g01033 626 ProSiteProfiles Protein kinase domain profile. 287 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g01033 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Phco4g01033 626 SUPERFAMILY Protein kinase-like (PK-like) 326 607 IPR011009 -
Phco4g01033 626 CDD LysM 186 230 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01033 Phco-Chr4 8192013 8193893 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Phco4g01033 Pkinase 8.9e-40 CL0016