LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco4g01012	ATGAATCATCGACCTTTCCAAGACCACATGATGTTCATCTCTCAGTTATACCCCGCTGATGCACCATACACGCAAATAATTGCTCAACAAGGGGAGAGTAAGAAGCCAAAACGCCGTCGTAGTAAGAAGAACAAAGGAGGAGAAAACGGTGCCTCGGAAGCCAACAAGAAGAGGAAGCTTAGTGCGGAGCAAGTTAATCTACTTGAACATAACTTTGGAAATGAACATAAACTTGAGTCTGAGAGGAAAGACAAGCTTGCATTGGAGCTTGGTTTGGACCCTCGACAAGTTGCAGTATGGTTTCAAAACAGAAGAGCTCGCTGGAAGAACAAAAAGCTAGAAGAAGAGTACTCAAACCTTAAAAAATCCCATGAAGCCACCTTGCTCGAGAAATGCCGATTGGAGACCGAGGTACTGAAGCTGAAAGATCAACTTTCTGAGGCGGAGAAAGAGATTCAGAGGCTGCTAGAGAGTGGTGATAGGGTTCCAAGTAACAGCTCTAGCTCGTCACAGTCACAATCACAATCACAATCTATGGAGGCGGTGGACCCACCATTTTTTGGGGTGTTTGGAGTTGATGGATATGATGATGATGTATTGTACGGGCCCGAGACTCAGTGCATGAACGCCTTGGAATGGATTAATCTGTATATGTAA	657	0.4475	MNHRPFQDHMMFISQLYPADAPYTQIIAQQGESKKPKRRRSKKNKGGENGASEANKKRKLSAEQVNLLEHNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKSHEATLLEKCRLETEVLKLKDQLSEAEKEIQRLLESGDRVPSNSSSSSQSQSQSQSMEAVDPPFFGVFGVDGYDDDVLYGPETQCMNALEWINLYM	218

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco4g01012	218	Pfam	Homeodomain	56	110	IPR001356	GO:0003677
	Phco4g01012	218	CDD	homeodomain	56	112	IPR001356	GO:0003677
	Phco4g01012	218	MobiDBLite	consensus disorder prediction	45	61	-	-
	Phco4g01012	218	FunFam	homeobox-leucine zipper protein ATHB-40	50	119	-	-
	Phco4g01012	218	Gene3D	-	47	120	-	-
	Phco4g01012	218	MobiDBLite	consensus disorder prediction	28	61	-	-
	Phco4g01012	218	SMART	HOX_1	54	115	IPR001356	GO:0003677
	Phco4g01012	218	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	32	176	IPR045224	GO:0003700
	Phco4g01012	218	Coils	Coil	103	130	-	-
	Phco4g01012	218	PRINTS	Lambda-repressor HTH signature	91	107	IPR000047	GO:0003677
	Phco4g01012	218	PRINTS	Lambda-repressor HTH signature	82	91	IPR000047	GO:0003677
	Phco4g01012	218	MobiDBLite	consensus disorder prediction	156	178	-	-
	Phco4g01012	218	SUPERFAMILY	Homeodomain-like	55	120	IPR009057	-
	Phco4g01012	218	MobiDBLite	consensus disorder prediction	159	178	-	-
	Phco4g01012	218	Coils	Coil	138	158	-	-
	Phco4g01012	218	ProSiteProfiles	'Homeobox' domain profile.	51	111	IPR001356	GO:0003677
	Phco4g01012	218	ProSitePatterns	'Homeobox' domain signature.	86	109	IPR017970	GO:0000981\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco4g01012	Phco-Chr4	8014695	8016509	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-other	Phco4g01012		Homeodomain	1.9e-16	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco4g01012	4	8014695	8016509	Phco4g01012	4	8014695	8016509	ECH
	Phco4g01012	4	8014695	8016509	Phco8g00504	8	4921039	4922245	PCT