Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01003 ATGCCGGTTGACTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTGCCCCTAAAACCCACAGCAAAGAAGAAGCGAAACCTTCCAGGAATGCCAGATCCGGATGCTGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCGACGAACCGGTTCGTGTGTGAAATATGCAACAAGGGTTTTCAGAGGGACCAGAACCTTCAGCTTCATCGGAGGGGTCACAATCTGCCGTGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAAGAAGAGAGTGTACGTGTGTCCCGAACCGACGTGCGTTCACCACGATCCTTCTAGAGCTTTGGGGGATCTCACGGGGATTAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGTACCCTCTTCTCAAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTGGCAGAGGAAAGTGCAAGATCTCAGCCTCAGACTGTTGCAAAGGCTAGTTCCGAGTCAGATTCGAAGGCTGTGACCGGTGATTCGTCGCCTCCGGCGGTGGCGGTGGCTACGCCTCCACCGCCTCCTGCACCGCCGGCTAGTCCTAAGTCAAACAGTGTTGTTGTATCGTCGTCTGCTTTGCAGACACAAAATCCAGAGTTGCCAGAAAATTCCCCACAAGTCATAGAAGAAACGCAGGCTAATCCTGCTATGAGTGGAAGCTGTAGCAGCAGCGGTACCAGTACCAGCACTAGCTCAACAAGCAACAGCAATGGTGGGGGTAGCAGCAGTGTATTTGCAAGCCTGTTTGCTTCATCAACAGCAGCATCCGCAACTGCAAGCCTCCATTCTCAAACACCAGCATTCACTGACCTAATCAGGGCCATGGGGCATCCAGATCATCCAGCAGACCTCTCAAGGCCTTCATCTTCGGAGCCCATTTCTCTGTGTCTTGCTACCAATCACGGGTCATCCATTTTTGGAACAGGATTGCAGGAGTGCCGTCAATATGCCCCACCGCCACAGCCAGCCATGTCTGCTACTGCTTTGCTACAGAAAGCCGCCCAAATGGGTGCAGCTGCCACAAATGCCTCTTTTCTTCGTGGATTAGGCATAGTGTCGTCTGCGTCAACCTCATCAGGTCAGCAAGATAGTTTGCAATGGGGTCAGCAGCCCGGGGAACCGGAGGGTGCCTCAGTTCCTGCAGGTCTTGGACTCGGGCTTCCCAGCGATGGCAACTCTGGACTAAAGGAGTTAATGATGGGGACTCCCTCTGTGTTTGGTCCAAAGCAGACCACCCTTGATTTTCTCGGGCTGGGAATGGCTGCTGGGGGCAACCCCGGTGGAGGCTTATCGGCACTCATTACCTCAATTGGTGGCAGTCTGGATGTTACTGCTGCTGCAGCGGCAGCATCCTTTGGTAGTGGAGAATTCCCTGGCAAAGATATTGGGAGGAGTACTTGA 1566 0.5307 MPVDLDNVSTASGEASVSSSGNQTVPLKPTAKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQPQTVAKASSESDSKAVTGDSSPPAVAVATPPPPPAPPASPKSNSVVVSSSALQTQNPELPENSPQVIEETQANPAMSGSCSSSGTSTSTSSTSNSNGGGSSSVFASLFASSTAASATASLHSQTPAFTDLIRAMGHPDHPADLSRPSSSEPISLCLATNHGSSIFGTGLQECRQYAPPPQPAMSATALLQKAAQMGAAATNASFLRGLGIVSSASTSSGQQDSLQWGQQPGEPEGASVPAGLGLGLPSDGNSGLKELMMGTPSVFGPKQTTLDFLGLGMAAGGNPGGGLSALITSIGGSLDVTAAAAAASFGSGEFPGKDIGRST 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01003 521 MobiDBLite consensus disorder prediction 1 42 - -
Phco4g01003 521 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Phco4g01003 521 MobiDBLite consensus disorder prediction 412 441 - -
Phco4g01003 521 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Phco4g01003 521 MobiDBLite consensus disorder prediction 237 295 - -
Phco4g01003 521 Gene3D Classic Zinc Finger 41 107 - -
Phco4g01003 521 MobiDBLite consensus disorder prediction 412 426 - -
Phco4g01003 521 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Phco4g01003 521 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 480 IPR031140 -
Phco4g01003 521 SMART c2h2final6 102 132 IPR013087 -
Phco4g01003 521 SMART c2h2final6 61 83 IPR013087 -
Phco4g01003 521 SMART c2h2final6 137 157 IPR013087 -
Phco4g01003 521 MobiDBLite consensus disorder prediction 9 29 - -
Phco4g01003 521 Gene3D Classic Zinc Finger 115 195 - -
Phco4g01003 521 FunFam protein indeterminate-domain 12-like 40 108 - -
Phco4g01003 521 MobiDBLite consensus disorder prediction 195 295 - -
Phco4g01003 521 MobiDBLite consensus disorder prediction 221 236 - -
Phco4g01003 521 MobiDBLite consensus disorder prediction 195 214 - -
Phco4g01003 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01003 Phco-Chr4 7944611 7946957 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco4g01003 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01003 4 7944611 7946957 Phco4g01003 4 7944611 7946957 ECH
Phco8g00499 8 4755389 4757587 Phco4g01003 4 7944611 7946957 ECH
Phco4g01003 4 7944611 7946957 Phco8g00499 8 4755389 4757587 PCT