Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00989 ATGTCTTCCACTCCTCATAACAATTCTCCTGATGATGAAACACCTGATAACTCCACCCCAGACAACAGCACCCCTGATGACGCTGACAACTCATCTTCACCACCATCAAAATCACCACCTCCATCATCACCGCCACCATCATCACCCCCACCTTCTTCGCCACCTCCATCTCCGCCACAATCATCATCATCACCACCTCCATCGCCCTCACCACCAACATCTTCATCTTCGCCACCCCCATCAGAAAAGTCCCCTCCTTCTCCTCCAACGTCAAGCAATTCAAGCCCGCCATCACCCAATAGTTCCTCACAGTCACCTTCTCCACCCGGATCCTCACACTCTCCTCCCTCCTTTGAATCACCCTCTCCTCCACACAAATCATTACAATCTCCACCCACTTCAAAAAATAGTGGAAGTAGAAGTGACGATGGCAGTACACGTGGAAGTAACAATAGCAGTAATCGTGGCAGCAACGATAACAGTAGAGCCATAGTTGGAGCAGTGCTTGGGGTGGGGAGCGTGCTTCTTCTTTTGGTCATCGTCTGCGTTATCTGCTCCAGGAAGAAGAAAAAGAAGAGAATGTACTATTATGGAGAGCAATCACTTGGAAAAGGGAATAATAACTATTACACTAGCGGGCAACACCCAGGTTATTACGGAGGTCCACACGGGGACCATGTGGTGAGGGTACAAAATGGAATGGGTCCTGGTGGTGGTGGTGGTGGTGGAGGTGGGTGGGGGGCACCACCGCCTCCCATGATGAATAGTGCTGATATGAGCTCGAACTACTCGACGGGACCCGCTTTGCCTCCTCCCTCACCAAGCCTTGCTCTTGGCCTGAAAGGTGGCACCTTCACTTATGAGGAACTAGCTGCTGCCACCAACGGATTCGATGATTCAAAACTGATAGGACAGGGGGGCTTCGGTTATGTCCACAAGGGTGTGTTGCCAAATGGAAAGGAAGTAGCAGTGAAGAGTCTAAAAGCGGGAAGTGGACAGGGAGAACGAGAGTTCCAAGCTGAGATTGACATCATTAGTCGTGTCCATCATCGCCATCTTGTGTCACTCGTTGGATACTCAATTTCTGATGGCCAGAGAATGTTGGTCTATGAATTTATTCCCAATAATACATTGGAATATCATCTTCATGGAAAGGGCAGGCCAACAATGGATTGGCCTACTAGAATGCGAATTGCAATAGGATCATCCAAAGGACTTGCTTATCTTCATGAAGATTGTCATCCTCGTATAATCCATCGTGATATTAAAGCTGCCAATGTCCTGATTGATGATAGCTTCGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACTTCTGATAATAATACTCATGTATCGACTCGAGTCATGGGAACTTTCGGGTACCTAGCCCCAGAATATGCATCAAGTGGAAAATTAACTGAGAAGTCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACTGGGAGGCGACCTGTGGATCACACAAGTGCCATGGACGATAGCTTAGTAGATTGGGCTCGACCACTGCTGACTCGTGGATTGGAAGAGGATGGTGACTTTGGAGAGTTGGTTGATCCATTCTTGGAAGGAAACTACAATCCTCAAGAATTGGCAAGGATGGCAGCTTGTGCTGCTTCTAGCATTCGTCATTCTTCCAAGAAACGTCCAAAAATGAGCCAGATTGTAAGAATATTGGAAGGAGACGTGTCACTGGATGATTTGAAAGATGGGATAAAGACAGGGCAGAGTGTTACTTTCAATTCTTCATCTGGGTCAGAACAGTATGATACAATGCAATACAATGCTGACATGGCAAAGTTTAGAAAGGCAGTGTTTTCTAGCCAGGAATTTGACACGAGCAGTGGTGGCTCTAGTAGTGAAGTGATCCCAAAACAACAACATTAG 1920 0.4698 MSSTPHNNSPDDETPDNSTPDNSTPDDADNSSSPPSKSPPPSSPPPSSPPPSSPPPSPPQSSSSPPPSPSPPTSSSSPPPSEKSPPSPPTSSNSSPPSPNSSSQSPSPPGSSHSPPSFESPSPPHKSLQSPPTSKNSGSRSDDGSTRGSNNSSNRGSNDNSRAIVGAVLGVGSVLLLLVIVCVICSRKKKKKRMYYYGEQSLGKGNNNYYTSGQHPGYYGGPHGDHVVRVQNGMGPGGGGGGGGGWGAPPPPMMNSADMSSNYSTGPALPPPSPSLALGLKGGTFTYEELAAATNGFDDSKLIGQGGFGYVHKGVLPNGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYSISDGQRMLVYEFIPNNTLEYHLHGKGRPTMDWPTRMRIAIGSSKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTSDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDHTSAMDDSLVDWARPLLTRGLEEDGDFGELVDPFLEGNYNPQELARMAACAASSIRHSSKKRPKMSQIVRILEGDVSLDDLKDGIKTGQSVTFNSSSGSEQYDTMQYNADMAKFRKAVFSSQEFDTSSGGSSSEVIPKQQH 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00989 639 PRINTS Proline rich extensin signature 13 25 - -
Phco4g00989 639 PRINTS Proline rich extensin signature 68 85 - -
Phco4g00989 639 PRINTS Proline rich extensin signature 30 51 - -
Phco4g00989 639 PRINTS Proline rich extensin signature 51 67 - -
Phco4g00989 639 MobiDBLite consensus disorder prediction 1 33 - -
Phco4g00989 639 FunFam proline-rich receptor-like protein kinase PERK1 275 372 - -
Phco4g00989 639 MobiDBLite consensus disorder prediction 34 128 - -
Phco4g00989 639 Pfam Protein tyrosine and serine/threonine kinase 301 502 IPR001245 GO:0004672|GO:0006468
Phco4g00989 639 SMART serkin_6 297 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00989 639 ProSiteProfiles Protein kinase domain profile. 297 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00989 639 SUPERFAMILY Protein kinase-like (PK-like) 279 570 IPR011009 -
Phco4g00989 639 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Phco4g00989 639 FunFam Proline-rich receptor-like protein kinase PERK1 373 581 - -
Phco4g00989 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Phco4g00989 639 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 171 615 IPR047117 -
Phco4g00989 639 Gene3D Phosphorylase Kinase; domain 1 277 372 - -
Phco4g00989 639 MobiDBLite consensus disorder prediction 1 160 - -
Phco4g00989 639 MobiDBLite consensus disorder prediction 234 268 - -
Phco4g00989 639 MobiDBLite consensus disorder prediction 129 160 - -
Phco4g00989 639 Gene3D Transferase(Phosphotransferase) domain 1 373 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00989 Phco-Chr4 7822213 7828934 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Phco4g00989 PK_Tyr_Ser-Thr 4.6e-45 CL0016