Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00985 ATGGAAGTGGAGGCTACGAACTATCAGAATCTTCCCGTTCATTTTCGTCTTCCCAACTTCTCAGAGTCCCAACTCTTCCGTTTTGCCCCTTCCATTTCTTCATCGTTTTCTCTGCCAGGGTTTGAAATGGAGACGAAGGACAAAGTGAATAATGAGGATCTTGCTGTGGAGTCTCCAACTTCAGTTCTCGAAGACGAGGATGTTTGTGCCCCCAAAGACGAGGTTAAGTTGGAAGAAGAGTTAATTGCTGATGTGAAAGACGATGGGTCTTCTATTGTATCGAAGACTATGGCAGAGGAGGAAGAGAAGTTACTTAAAGCTAGGATAAAGGAAGAGGAGGTGCAGTGTGGGGAGGCACCTGATCTCAGCGACACACAGTTTAACAAATTGGATGAGCTTTTGACTCAGACCAAACTGTACTCTGAGTTTTTGCTGGAGAAAATGGATGACATCGCACTTACTGTGGGTGAACAAGTGAAAGTGGAAGAGCTAGAGAGTAATCCTTCTGCAAAGAGGGGACGTGGATCGAAAAGAAAAGCTGCTTCCCAGTGCAATACTAGGAGGGCCAAGAGGGCAGTTGCTGCCATGCTAACAAGATCTAAAGAAGGTGAGGGGACTGCAGATATGAAAATGACAGAGGAAGAAAGAGTTGAGAAGGAGCAGAAAGAGCTCATGCCTTTACTGACAGGTGGGAAATTGAAGCCTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGGTTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGAAAGACAATCCAAACGATTGGATTTCTCTCGCATCTAAAAGCAAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTCTCAAACTGGATGAATGAGATTTCTAGGTTTGCACCATCACTTCCTGCCATTGTCTACCATGGTAGCAAGAAGGAGAGAGATGAGATCCGAAGGAAACATATGCCTACTAGAACAATTGGTCCAAAATTTCCCATAGTCATAACTTCTTACGAGGTTGCATTAAATGACGCTAGGAAATATTTCAGGCCATACAATTGGAAATATCTCGTTGTTGACGAGGGACACAGGCTCAAAAATTCAAAATGCAAATTAGTGAAGGAGTTGAAATACATAAAAGTTGAAAACAAGATTCTTCTAACTGGAACTCCTCTTCAGAATAACCTGGCCGAATTATGGTCTCTATTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGCGAAGGGCAATAATGAAGCAACCAAGGAAGAACTGGAAGAGAAACGGAGATCCCAAGTAGTAGCAAAGCTTCATGCTATTCTTCGACCCTTTCTTCTGCGTAGGATGAAGTCTGATGTTGAGATTATGTTGCCAAAGAAAAAAGAGATTATTATCTATGCAAACATGACTGAGCATCAGAAGAATTTGCAGGATCATTTAGTTAATAAGACGTTGGGAAACTATTTAGAAGAAAAGATGTCTAGCGGACGCCCGGTTCCTGGAGGTGCGATTCGTAATTTGGTTATTCAGCTTAGGAAAGTGTGTAACCATCCTGATCTTCTAGAATCAGCTTATGATGATACATCTTGCTATCCTCCTTTAAATGAGATAGTTGAACAGTGTGGAAAATTCCATTTGCTTGATCGATTGGTGCAACGTTTATTTGCAAGGAATCACAAAGTTCTTGTCTTCAGTCAATGGACTAAAGTGTTGGATATAATGGATTATTATTTTAGTGAAAAAGGCTTTGAAGTTTGCAGGATTGATGGTTCTGTGAGACTGGATGAGAGGAAACGACAGATCGAGGACTTTAACGATGCAAATAGCAGTTGCAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATCAACCTCACTGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGATGGATTTACAAGCCATGGATAGGTGTCATAGAATTGGTCAAACAAAGCCTGTTCATGTCTACCGGCTCTCAACTGCTCAATCTATAGAGGATCGCATGTTGAAAAGAGCTTTCAGCAAATTGAAGCTTGAGCATGTAGTGATTGGGAAAGGACAGTTTCATCAAGAACGTACAAAAACTGTCAATAGGGATGAGATGGAGGAAGAGGATGTTTTGGCATTGCTTCGTGACGAAGAAACAGCCGAAGATAAAATGATTCGAACAGATATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGCGATCTTATCGTCAACAACAAAGACGATGGTAACTCGAAACCTCCATGCAGTACCATTCCTCTTAAAGGGCCAGGGTGGGAGGTGGTGATTCCAAATGCGAGTGGAGGCATGCTCTCTACTCTCAACAGCTAG 2415 0.4215 MEVEATNYQNLPVHFRLPNFSESQLFRFAPSISSSFSLPGFEMETKDKVNNEDLAVESPTSVLEDEDVCAPKDEVKLEEELIADVKDDGSSIVSKTMAEEEEKLLKARIKEEEVQCGEAPDLSDTQFNKLDELLTQTKLYSEFLLEKMDDIALTVGEQVKVEELESNPSAKRGRGSKRKAASQCNTRRAKRAVAAMLTRSKEGEGTADMKMTEEERVEKEQKELMPLLTGGKLKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWMNEISRFAPSLPAIVYHGSKKERDEIRRKHMPTRTIGPKFPIVITSYEVALNDARKYFRPYNWKYLVVDEGHRLKNSKCKLVKELKYIKVENKILLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSAKGNNEATKEELEEKRRSQVVAKLHAILRPFLLRRMKSDVEIMLPKKKEIIIYANMTEHQKNLQDHLVNKTLGNYLEEKMSSGRPVPGGAIRNLVIQLRKVCNHPDLLESAYDDTSCYPPLNEIVEQCGKFHLLDRLVQRLFARNHKVLVFSQWTKVLDIMDYYFSEKGFEVCRIDGSVRLDERKRQIEDFNDANSSCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIEDRMLKRAFSKLKLEHVVIGKGQFHQERTKTVNRDEMEEEDVLALLRDEETAEDKMIRTDISDEDLEKLLDRSDLIVNNKDDGNSKPPCSTIPLKGPGWEVVIPNASGGMLSTLNS 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00985 804 SMART ultradead3 229 425 IPR014001 -
Phco4g00985 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 758 IPR027417 -
Phco4g00985 804 MobiDBLite consensus disorder prediction 163 185 - -
Phco4g00985 804 FunFam Chromatin complex subunit A 106 474 703 - -
Phco4g00985 804 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 562 728 IPR001650 -
Phco4g00985 804 CDD SF2_C_SNF 548 682 - -
Phco4g00985 804 Gene3D - 470 772 IPR027417 -
Phco4g00985 804 Coils Coil 95 115 - -
Phco4g00985 804 Pfam Helicase conserved C-terminal domain 565 672 IPR001650 -
Phco4g00985 804 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 245 414 IPR014001 -
Phco4g00985 804 SMART helicmild6 588 672 IPR001650 -
Phco4g00985 804 Pfam SNF2-related domain 236 536 IPR000330 GO:0005524|GO:0140658
Phco4g00985 804 PANTHER SNF2/RAD54 HELICASE FAMILY 75 737 - -
Phco4g00985 804 FunFam ATP-dependent DNA helicase DDM1 227 473 - -
Phco4g00985 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 464 IPR027417 -
Phco4g00985 804 Gene3D - 200 463 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00985 Phco-Chr4 7797546 7803591 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco4g00985 SNF2_N 4.8e-64 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00985 4 7797546 7803591 Phco4g00985 4 7797546 7803591 ECH