Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00969 ATGCATCGCTGTTGCAGTGGCTCCCAGGGGCACGTCATAGGACACTGTACATGTGGCATGTTCCACAGCCAAACCACCTCCTTCTCCATGCTCTTCTCAGTGCCCAACCACAAGCCACCCTACCAAGATTCCGACATCTATGATTATTCCTTCACCCCCTCATCCTCTTCCTCTTCCGTTGACTGCACCCTCTCCCTAGGAACCCCATCCACCCGTTTCTCCGAAGACGAGGAAAAACGTACCCGCCACGAACGTCGCTCGGTTTCTAACTTCTGTTGGGACTTACTACAATCCAAACACAGCCCTCAATCCCAAACCAAATCCTCCCGAACCTCCAATACCACCTCAAACACCGACCCTCTCCTCGCTCGCCGCTGCGCCAATTGTGACACCACCTCAACTCCCCTTTGGAGAAATGGCCCCCGAGGCCCCAAGTCACTGTGCAATGCATGTGGGATTAGATTCAAGAAGGAGGAGAGAAGGGCGAGTGCTGCGGCTGCACCGCCGCCGCCGGCTTCTGGCGGCTTGATGGAATCGGCGCAGGTGTACAACAACTCGTGGTACACACACCCGCAGAGTCAGAAGATGCAGTGTTTCTCGCCGGGAATGGGGAGCGAGTTCCGTTTCGCGGATGACGAGAATCGAGACGCCGATAACGGCATTCCGTTTCTCTCGTGGAGACTCAACGTCACAGACAGAACGAGCCTCGTTCACGACTTCACAAGATGA 729 0.5556 MHRCCSGSQGHVIGHCTCGMFHSQTTSFSMLFSVPNHKPPYQDSDIYDYSFTPSSSSSSVDCTLSLGTPSTRFSEDEEKRTRHERRSVSNFCWDLLQSKHSPQSQTKSSRTSNTTSNTDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAAPPPPASGGLMESAQVYNNSWYTHPQSQKMQCFSPGMGSEFRFADDENRDADNGIPFLSWRLNVTDRTSLVHDFTR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00969 242 Gene3D - 122 174 IPR013088 GO:0006355|GO:0008270
Phco4g00969 242 MobiDBLite consensus disorder prediction 99 120 - -
Phco4g00969 242 PANTHER GATA TRANSCRIPTION FACTOR 18 12 242 IPR044272 GO:0003700|GO:0009908
Phco4g00969 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 162 - -
Phco4g00969 242 ProSitePatterns GATA-type zinc finger domain. 126 151 IPR000679 GO:0006355|GO:0043565
Phco4g00969 242 SMART GATA_3 120 172 IPR000679 GO:0006355|GO:0043565
Phco4g00969 242 CDD ZnF_GATA 125 157 IPR000679 GO:0006355|GO:0043565
Phco4g00969 242 ProSiteProfiles GATA-type zinc finger domain profile. 120 156 IPR000679 GO:0006355|GO:0043565
Phco4g00969 242 Pfam GATA zinc finger 126 160 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00969 Phco-Chr4 7645532 7646464 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco4g00969 GATA 5.8e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00969 4 7645532 7646464 Phco4g00969 4 7645532 7646464 ECH
Phco4g00969 4 7645532 7646464 Phco8g00481 8 4568179 4569377 PCT