Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00964 ATGGAAATGGGAGGGCAAGATAAGGAAATAGAGATACCAACAAGTTTAGGTTACAACCTTCCCAACCGAGATTCTTCTTCTTCCTCTTCCAAGCTCTCTTCTCCAACAGTTGGTGAAAGAAGTACCACTCATCATGATCATGATCAACTTCATCAACCACCTCATCAAACTCACACATTAATCTTCAACGAACCGCCTCACCATAATCTCTATCAACCACCTCCTCCTCTTGCACCTCGTCAACCTCATAGACTCACACCAGATCCAGATCTAAGCACCCCAATTGCTCCCACATCTAATCCCCTAAGAGCAGCACACCCTCAGACAACAACAATAGCAGCAGCAGCAGCAACCACCTCAACCCCGTCGATCAGATACCGAGAATGTCTACGGAACCACGCGGCAAGCATGGGGAGCCACGTGGTGGATGGCTGTGGAGAGTTCATGGCAAGTGGAGAAGAAGGTACGCCGGAATCACTAAGATGCGCCGCGTGTGAGTGCCACCGCAACTTCCACAGGAAAGAGGTTGAGGGAGACTTACTGCCACAGCAACCACCGCCACTGTCACTACTACCACAACAACAACAACAACATGCTCCCAATTATCACAGCTACTACCCCAACAAGCACAACGGACACCTTCACTACCCTACACCATCTCCTTCTTCCCTCCACCATAGATTGGTTGGCAGCAGTGGTACACCAAGTTTGGTCCCCCCGGTGATGATGGCCTTTGGAGGCCCAGCTGAGTCCTCAAGTGAAGATCTCAACATGTTTCAGTCCAACACTGGAGGAGCACAGTTATCAGTGCAGGCGCCACTTTCTTCCAAGAAGAGGTTTAGGACTAAGTTCTCTCAGCACCAGAAGGATAGGATGATGGAGTTTGCTGAAAAGATTGGTTGGAAGATCCAGAAACATAATGAGCAGGAGGTACAACACTTTTGTTCTCAAGCGGGCGTCAAGAGACAGGTTTTCAAGGTTTGGATGCACAATAACAAGAAGCACCCAATGTAA 1014 0.4892 MEMGGQDKEIEIPTSLGYNLPNRDSSSSSSKLSSPTVGERSTTHHDHDQLHQPPHQTHTLIFNEPPHHNLYQPPPPLAPRQPHRLTPDPDLSTPIAPTSNPLRAAHPQTTTIAAAAATTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTPESLRCAACECHRNFHRKEVEGDLLPQQPPPLSLLPQQQQQHAPNYHSYYPNKHNGHLHYPTPSPSSLHHRLVGSSGTPSLVPPVMMAFGGPAESSSEDLNMFQSNTGGAQLSVQAPLSSKKRFRTKFSQHQKDRMMEFAEKIGWKIQKHNEQEVQHFCSQAGVKRQVFKVWMHNNKKHPM 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00964 337 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 126 175 IPR006456 -
Phco4g00964 337 MobiDBLite consensus disorder prediction 1 106 - -
Phco4g00964 337 FunFam Zinc-finger homeodomain protein 2 265 337 - -
Phco4g00964 337 NCBIfam homeobox domain, ZF-HD class 277 334 IPR006455 -
Phco4g00964 337 SUPERFAMILY Homeodomain-like 266 333 IPR009057 -
Phco4g00964 337 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 109 334 - -
Phco4g00964 337 Gene3D - 265 336 - -
Phco4g00964 337 Pfam ZF-HD protein dimerisation region 124 176 IPR006456 -
Phco4g00964 337 MobiDBLite consensus disorder prediction 68 83 - -
Phco4g00964 337 MobiDBLite consensus disorder prediction 18 39 - -
Phco4g00964 337 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 125 176 IPR006456 -
Phco4g00964 337 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00964 Phco-Chr4 7619103 7620116 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Phco4g00964 ZF-HD_dimer 1.8e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00964 4 7619103 7620116 Phco4g00964 4 7619103 7620116 ECH
Phco8g00478 8 4522934 4524689 Phco4g00964 4 7619103 7620116 ECH
Phco4g00964 4 7619103 7620116 Phco8g00478 8 4522934 4524689 PCT