Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00958 ATGTCACAGCATTCCGGTTCCGGACTACCTTTTTCGCGGCGCTTCAAAACCACTTCATCTGCTCACTCCTATCTCTCCTTTGCCTTCTCCGATTCGCTTCTTCTCCTCGCTTATCGATCTGCCTTCTACAACTTTCCTTTCTCATTCCTCTCTCTCGCCGAACCTCAATTTCTCAGCTCATTTGCGGCGATTCGACTTTCCCTTTCTCGCTTCAATTTTTCAGTTTTTTTGGTGGAAGGAAGATTGATATGCTGTGGTAAAATGTCATTGAAAAGTATAGTAAGAGAACTAAAGGAGATGAGAGATGGGATTGGAAGCATGTCAAGGCGAGGTGTGGAGAGCAGGCGTTGGAATGGTCGGACAAAGTCACATGTTGCTCCAGAAATCACTTTAACTTCACTTGAACCCATTCAGCAAGGGCAGTGGGCGAATTTACCCCCTGAATTGATTCTGGACATAATAAGTAGAGTGGAAGAGAGTGAGACTAGCTGGCCTGCACGTGCCGTTGTTGTTCATTGTGGTTCTGTTTGTAAATCGTGGAGGGATGTTACCAAAGAAATTGCCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCGTTGAAACAGCCCGGCCCTCGTGAGTCTCCAATACAGTGCTTTATCAGGAGGAACCGAGAGACTTCTACATATCTATTGTACATTGGCCTGGTACCATCGGAGAACGAGACTGATAAGTTGCTACTAGCTGCCAAAAAGGTAAGAAGGGCAACAGGCACAGACTTTGTTGTGTCTTTGGTTGCAGATGATTTTTCTCGGTCCAGCAACACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATTTATGACAGCCAACCACCAGAAGGAGCTGCAATTCAACAAGATACTCAGTCTAGTAGGAGATTTCATTCTAAGCAGGTATCTCCTAGAGTTTCAGCATTTAACTATGTTGTTAGCACCATTGCATATGAGTTGAATGTTCTCCGTGCAAGAGGGCCAAGGAGAATGCACTGCACCATGAATTCCATACCTATCTCAGCTATTCAGGAAGGGGGCACTGCTCCAACACCTACATCTTTCCCTCAAATCATTGACAAGCCTTTTTCTCCCTCACCAGTACTAAAAGGAAAAGGTCCAAGTACAGATTTAAATAATGTAGACCTCCCTAAGCTACCAGTACCTAGCCAAGGCTCAGATGAGCCCATGGTACTAAAAAACAAGGCTCCTAGATGGCATGAGCAACTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTCACAGTGGCTTCTGTTAAAAACTTTCAACTTGTGGCAGCTGTTGATCCTTCCCATAATGTTTCTGCTGCAGAACAAGAAAAAGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACCATGGATTACCGTTATCCGCTCTCTGCCTTCCAAGCCTTTGCCATATGCCTTAGCAGCTTTGATACCAAACCAGCCTGTGAATGA 1506 0.4436 MSQHSGSGLPFSRRFKTTSSAHSYLSFAFSDSLLLLAYRSAFYNFPFSFLSLAEPQFLSSFAAIRLSLSRFNFSVFLVEGRLICCGKMSLKSIVRELKEMRDGIGSMSRRGVESRRWNGRTKSHVAPEITLTSLEPIQQGQWANLPPELILDIISRVEESETSWPARAVVVHCGSVCKSWRDVTKEIAKTPEQCGRITFPISLKQPGPRESPIQCFIRRNRETSTYLLYIGLVPSENETDKLLLAAKKVRRATGTDFVVSLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPEGAAIQQDTQSSRRFHSKQVSPRVSAFNYVVSTIAYELNVLRARGPRRMHCTMNSIPISAIQEGGTAPTPTSFPQIIDKPFSPSPVLKGKGPSTDLNNVDLPKLPVPSQGSDEPMVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00958 501 ProSitePatterns Tub family signature 2. 486 501 IPR018066 -
Phco4g00958 501 Gene3D - 135 191 - -
Phco4g00958 501 Gene3D Tubby Protein; Chain A 200 501 IPR025659 -
Phco4g00958 501 MobiDBLite consensus disorder prediction 383 408 - -
Phco4g00958 501 PANTHER TUBBY-RELATED 134 499 - -
Phco4g00958 501 Pfam F-box domain 142 187 IPR001810 GO:0005515
Phco4g00958 501 SUPERFAMILY Tubby C-terminal domain-like 191 501 IPR025659 -
Phco4g00958 501 PRINTS Tubby superfamily signature 411 428 IPR000007 -
Phco4g00958 501 PRINTS Tubby superfamily signature 257 273 IPR000007 -
Phco4g00958 501 PRINTS Tubby superfamily signature 429 445 IPR000007 -
Phco4g00958 501 PRINTS Tubby superfamily signature 479 501 IPR000007 -
Phco4g00958 501 PRINTS Tubby superfamily signature 322 349 IPR000007 -
Phco4g00958 501 PRINTS Tubby superfamily signature 273 297 IPR000007 -
Phco4g00958 501 PRINTS Tubby superfamily signature 458 477 IPR000007 -
Phco4g00958 501 CDD F-box_AtTLP-like 142 186 - -
Phco4g00958 501 ProSitePatterns Tub family signature 1. 429 442 IPR018066 -
Phco4g00958 501 Pfam Tub family 203 496 IPR000007 -
Phco4g00958 501 SUPERFAMILY F-box domain 136 186 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00958 Phco-Chr4 7567189 7569774 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Phco4g00958 Tub 4.8e-106 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00958 4 7567189 7569774 Phco4g00958 4 7567189 7569774 ECH
Phco8g00472 8 4460465 4468543 Phco4g00958 4 7567189 7569774 ECH
Phco4g00958 4 7567189 7569774 Phco8g00472 8 4460465 4468543 PCT