Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00918 ATGGCGGGTTTATTCTCACTAGGAGGTAGAGGAAACAACAACGAAGAGGAGATTCCTCCCCCTCCTGATACCCTATACTGGTATAACAACAAGAATGACGACGTTTCTTCTTACCACCGAGGCGGTGGCTTTGAACTATGGAACCAACAGCAGCAGCAACACTTTATGGACCAGGGTCCTCCACAACCACGACCCCTCTTTCACCAAGATCTATACTCCGCCTTGGGCGTTGGACCCAGCAGGCCTATCTCCGATGATCAGTCATCATCGAGATCCGGCTTCATGGTGGGAGGAGGAAGCGGGAGTGGAAGTGGTGGGATTAACTGTCAAGATTGTGGAAACCAAGCTAAAAAGGATTGCCCTCACATGCGGTGCAGAACATGCTGCAAGAGCCGGGGCTTCGATTGCCAAACCCATGTCAAGAGCACATGGGTACCGGCTTCACGCCGTCGCGAGAGACAGCAACAACTCTCCACGTTACAACAAAACATTGAAACTTCTGGAGACCTTCCCAAAAGGCAGAGAGAGAGGGATCATAATAACCCCACCTCCTCTTCTCTCGCCTGCACTCGCTTGCCTTCCAATCCCTCCTCCTCAGGGTTAGAGGAGGTTAATTTCCCGGCGGTGGTGAGATCTTCTGCGGAGTTCAGGTGCGTACGTGTGAGCTCGATGGACGAGGCGGATGAGGAGTATGCATACTCAACTGCTGTGAACATTGGAGGGCATGTGTTCAAAGGGATTTTATATGACTATGGTCCAGAAGGTAACCGTAATTACATGGGTGGTAATGGGGAAAGCTCTTCCACTGGTGTTGGAGGTTTGAACCTCACTACTGGTGCTGTTGTCTCAGAGCCACTCCTTGATCCTTCTTCTTCCTTGTATCCAGCTCCTCTTAACACTTTCATGCCTGGTAGCGGTACGCAATTCTTCCCTCACCCACACCCACGATCTTGA 954 0.5115 MAGLFSLGGRGNNNEEEIPPPPDTLYWYNNKNDDVSSYHRGGGFELWNQQQQQHFMDQGPPQPRPLFHQDLYSALGVGPSRPISDDQSSSRSGFMVGGGSGSGSGGINCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERQQQLSTLQQNIETSGDLPKRQRERDHNNPTSSSLACTRLPSNPSSSGLEEVNFPAVVRSSAEFRCVRVSSMDEADEEYAYSTAVNIGGHVFKGILYDYGPEGNRNYMGGNGESSSTGVGGLNLTTGAVVSEPLLDPSSSLYPAPLNTFMPGSGTQFFPHPHPRS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00918 317 NCBIfam LRP1 C-terminal domain 206 253 IPR006511 -
Phco4g00918 317 NCBIfam putative zinc finger domain, LRP1 type 108 150 IPR006510 -
Phco4g00918 317 MobiDBLite consensus disorder prediction 82 99 - -
Phco4g00918 317 MobiDBLite consensus disorder prediction 79 99 - -
Phco4g00918 317 Pfam Domain of unknown function (DUF702) 106 254 - -
Phco4g00918 317 MobiDBLite consensus disorder prediction 146 168 - -
Phco4g00918 317 MobiDBLite consensus disorder prediction 1 23 - -
Phco4g00918 317 MobiDBLite consensus disorder prediction 181 202 - -
Phco4g00918 317 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 299 IPR007818 GO:0003700|GO:0006355
Phco4g00918 317 MobiDBLite consensus disorder prediction 146 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00918 Phco-Chr4 7282139 7283771 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Phco4g00918 DUF702 2.8e-64 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00325 7 2308079 2309565 Phco4g00918 4 7282139 7283771 ECH
Phco4g00918 4 7282139 7283771 Phco4g00918 4 7282139 7283771 ECH
Phco7g00121 7 817881 818714 Phco4g00918 4 7282139 7283771 ECH