Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00907 ATGGGTCGCGGCAAAATTGAGATAAAGTTGATTGAGAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGCGATGCCAAGGTTTCACTCATCATGTTCTCAAAAAACAACAAGATGCATGAATATATTAGTCCTGGCCTTACCACAAAAAAGATCGTTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCCCACTATGAGAAAATGCTTGAGAACTTGAAGAAGCTGAAAGATATTAACAACAAACTCAGGAGACAGATCAGGCACAGGATTGGTGAGGGTTTGGATTTGGACGAGCTGAGCTTCCAGCAACTGCGCACTCTTGAAGAGGATATGGTTGCTTCCATAGGGAAAATACGCGAGCGAAAGTTCCACGTGATCAAAACTCGGACTGATACCTGTAGGAAAAAGGTTAAAAGCTTGGAGCAGATGAATGGAAATCTTCTGCTTGAACTTAAGGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAGGAATCAGCAGTTGCACTGGCCAATGGTGCCTCCACCCTCTATGCATTCTGTCAGCACCATACTCATCTGAATCTTCCCTCACATCAACACCAACACCATGGAGAAGAACCCTTTAAAACTGACGATCTGCGCCTCGCTTAA 708 0.4449 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIVDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLDLDELSFQQLRTLEEDMVASIGKIRERKFHVIKTRTDTCRKKVKSLEQMNGNLLLELKEKCVIHPQFLLHDEGDEESAVALANGASTLYAFCQHHTHLNLPSHQHQHHGEEPFKTDDLRLA 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00907 235 Coils Coil 85 105 - -
Phco4g00907 235 MobiDBLite consensus disorder prediction 217 235 - -
Phco4g00907 235 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco4g00907 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Phco4g00907 235 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Phco4g00907 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco4g00907 235 MobiDBLite consensus disorder prediction 215 235 - -
Phco4g00907 235 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco4g00907 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 204 - -
Phco4g00907 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco4g00907 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco4g00907 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco4g00907 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco4g00907 235 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Phco4g00907 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phco4g00907 235 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00907 Phco-Chr4 7174616 7176726 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco4g00907 K-box 8.2e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00907 4 7174616 7176726 Phco4g00907 4 7174616 7176726 ECH