Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00890 ATGTTTCTAACTCTCATTGCTATTGATTGTAAAGTGGTTTGTAAAGGATGTGCAATTTCTAAGGTGGTAGATTTGTTCATCTGTATTCACCTTGAATCCAGGTGGAGCATCAGGAAAATTGTTTCCAGGAATTTCTTAGAAATGCTATGTGTTTTTTTACATGGGGGTGAAAGCCAAACTTCCCCATTCGTCCATTTTCATCTGAATGGTCCCAAGAGAAAAGAGACAATGGTTCAGTTTCACTCATTGTTTTCTGCAACGGTTACCATTAAGCACAAACCAACAAGTATTCTTTGGCATTCCCATATGCCTGTTCTTCTTCTCCTAGTGGTCTTGTGGGCACCCCTCTTAACGTGCGCCGATCGCAGCGCCGTTACTGTTGTGGAGATCCAAGCCTTGACGTCCTTCAAGCTCAACCTTCACGACCCCGTCGGAGCTCTCGACGGTTGGGATCCAACGTCGCCGGCGGCACCCTGCGACTGGCGCGGAGTAGCCTGCACCAATAACCGAGTCACGGAGTTGCGCCTGCCTCGCCTTCAACTGGGTGGCAGACTCAGTGAGCGTGTCTCCGAGTTGCGTATGTTACGCAAGATAAGTCTTCGTTCCAACAACTTCAACGGAACCATTCCTTCGTCACTCTCCAAATGCACGCTCTTATGGTCATTGTTCCTTCAGGATAATTCGTTTTCCGGCAACCTTCCGACGGAGATCGCGAACCTCACCGGCCTTAAGATTCTCAACGTCGCGCTAAACCGCCTCTCCGGCAGTATACCCGGCATTCTCCCCCTCGGCCTCAAAGCCCTCGACCTCTCGTCGAATGCCTTCTCCGGCGCGATTCCGAGCTCCATAGCGAACCTCTATCAGCTTCAGTTGATAAACCTGTCGTATAACCATTTTACCGGCGAGATCCCGGCGAGCCTCGGGGAGCTTCAGCAGCTGCAGTACCTATGGCTCGACCACAATCTCCTCGGAGGAACGCTTCCTTCGGCTCTCGCAAATTGCTCCGCGCTTTTGCATCTGAGCGTGGAAGGAAACGCGCTTACCGGCGTGATTCCGTCGGCGATTTCGGTGCTCCCGAAACTTCAGGTGATGTCGCTCTCTCAGAATAACTTCACTGGCTCCATTCCAGCTTCCGTTTTGTGCAACGGTTCGGTTCACGCGCCGTCGCTGCGGATTGTTCACCTCAGTTTCAACGGATTCGTTGATTTCGTGGGGCCTGAGATGAGCACGTGTATCAGTGTTCTTCAGGTTTTGGATATTCAGCACAATCGCATACGAGGCACGTTCCCGTTGTGGTTGACCAATGTGACCACGTTAACCGTGCTTGATGTGTCGAACAATGCACTTTTTGGGGAGGTTCCGCCTCAAATAGGAAACCTTGTGAAGTTGGAGGTTTTGAAGATGGCTAATAATTCCCTCACCGGTACCATTCCGGTGGAACTGAAGAAATGTGGGTTCCTAAGTGTCGTTGATTTTGAAGGCAACGAGTTTGGCGGAGAAGTTCCTTCGTTTTTGGGTGATGTGACGGGGCTGAGGGTGCTATATCTCGGTGGGAACCACTTCTCTGGTTCTGTTCCGGTGAGTTTTGGAAACCTTTCATTTCTTGAAATGTTGAGTTTGAGAGGTAACAGGTTGAATGGAAGTATTCCTGAGATGGTAATGAGATTGAACAATTTGACGATACTGGATCTTAGTGGAAACAAATTTACGGGTCAAGTTTATGCGAGTATTGGGAATTTGAATAAGTTGATGGTTCTCAATCTTAGTGGCAATGGCTTCTCTGGAAAAATTCCTTCTAGTTTGGGGAATCTTTTTAAGCTAACTACGCTTGACTTGAGCAAACAGAATCTTTCTGGAGAGTTACCGCTTGAGCTCTCGGGATTGCCCAGTTTGCAAGTTGTTGCACTGCAGGAAAACAAGTTATCTGGTGATGTGCCTGAAGGGTTTAGCAGTTTGACGAGTTTGCAGTATGTTAATCTCAGTTCTAATGCCTTTTCCGGGAATATTCCTGAAAATTATGGCTTTCTTCGTTCCTTGCTTGTTCTTTCGTTGTCTGATAATGACATTACAGGAGCAATCCCATCTGAAATTGGAAACTGCTCTGGTATTGAAATTCTTGAGCTTGGATCAAACTCTCTGGCAGGTCGCATTCCTGCTGATCTCTCTCGTCTCACCCTTTTGAGAGTGCTTGATTTGAGTGGAAACAATTTAACTGGGGACGTGCCTGCGGAAATCTCCAAATGCTCGGGGCTAACCACTTTGCTGGTGGATCACAACCGTCTTTCCGGGGAAATTCCTGGGTCCTTGTGGAATCTACCAAACCTGACAATGCTAGATCTCTCTGCTAACAACTTGAGTGGGGAAATTCCAAGCAATCTTTCTATGATTCCCAGTTTAGTGTTCTTAAATGTATCGGGAAATAACTTGGACGGTGAGATACCACCAACATTGGGATCTCGGTTCAGTTACCCCGATGTATTCGCAGATAATCCAGGTTTATGTGGGAAGCCATTGGATACGAAATGCGAAGACATAGATAATGGTAAGGACAGAAAGAGGATGATTGTGCTTGTGGTTGTAGTTGCTTGTGGAGCTTTTGTACTGGTTTTGTTTTGCTGCTTCTACGTGTTCAGTCTACTGAGATGGCGTAAAAGACTGAAACAGGGAGTATCGGGTGAAAAGAAAAAGAGTCCCGCTAGAGCCAGTTCTGGAACAAGTGGAGGTCGTAGCAGCAGCACTGAGAGTGGGGGCCCAAAACTAGTGATGTTCAACACCAAAGTTACACTTGCTGAGACCATTGAAGCAACAAGACAATTCGACGAAGAGAACGTGCTGAGCAGAACAAGGTATGGATTAGTGTTCAAAGCCTGTTACAACGATGGAATGGTCCTTTCCATTCGCAGGCTCCAAGATGGATCATTGGATGAAAACATGTTTAGAAAAGAAGCCGAATCACTAGGCAAAGTGAAGCACCGAAATTTAATAGTTCTCAGAGGTTACTATGCTGGGCCACCTGACATGAGACTCCTAGTCTACGATTACATGCCTAATGGAAACCTCGCAACCCTCCTCCAAGAAGCTTCTCACCAAGATGGCCACGTTCTAAATTGGCCAATGCGACACCTCATTGCACTGGGCATTGCCCGTGGTTTAGCCTTCCTACACCAATCCTCAATGGTCCACGGCACCGTGAAACCACAAAATGTTCTTTTCGATGCAGATTTCGAAGCCCATTTATCAGATTTCGGATTAGAAAAGTTAACAATAGCCACGACCCCAGGGGAAGCCTCAACTTCAGCATCCGCTTTGGGTTACATTTCTCCAGAAGCAGTGTTAACCGGGGAAGCCACAAAGGAGAGTGATGTTTACAGCTTTGGCATTGTGTTATTGGAACTGCTGACTGGAAAACGACCCGTCATGTTCACCCAGGACGAAGACATAGTGAAGTGGGTAAAAAAACAACTGCAAAGGGGTCAAATAACAGAGCTATTGGAACCGGGTTTGCTTGAGTTGGACCCTGAATCATCAGAGTGGGAAGAGTTTTTACTGGGTGTAAAAGTTGGATTACTTTGCACAGCACCCGACCCTCTTGATCGACCAACCATGTCTGACATTGTTTTCATGCTTGAAGGCTGCCGAGTTGGTCCTGATATCCCATCCTCTGCAGATCCCACCTCCCAACCTTCTCCGGTGTAA 3696 0.4729 MFLTLIAIDCKVVCKGCAISKVVDLFICIHLESRWSIRKIVSRNFLEMLCVFLHGGESQTSPFVHFHLNGPKRKETMVQFHSLFSATVTIKHKPTSILWHSHMPVLLLLVVLWAPLLTCADRSAVTVVEIQALTSFKLNLHDPVGALDGWDPTSPAAPCDWRGVACTNNRVTELRLPRLQLGGRLSERVSELRMLRKISLRSNNFNGTIPSSLSKCTLLWSLFLQDNSFSGNLPTEIANLTGLKILNVALNRLSGSIPGILPLGLKALDLSSNAFSGAIPSSIANLYQLQLINLSYNHFTGEIPASLGELQQLQYLWLDHNLLGGTLPSALANCSALLHLSVEGNALTGVIPSAISVLPKLQVMSLSQNNFTGSIPASVLCNGSVHAPSLRIVHLSFNGFVDFVGPEMSTCISVLQVLDIQHNRIRGTFPLWLTNVTTLTVLDVSNNALFGEVPPQIGNLVKLEVLKMANNSLTGTIPVELKKCGFLSVVDFEGNEFGGEVPSFLGDVTGLRVLYLGGNHFSGSVPVSFGNLSFLEMLSLRGNRLNGSIPEMVMRLNNLTILDLSGNKFTGQVYASIGNLNKLMVLNLSGNGFSGKIPSSLGNLFKLTTLDLSKQNLSGELPLELSGLPSLQVVALQENKLSGDVPEGFSSLTSLQYVNLSSNAFSGNIPENYGFLRSLLVLSLSDNDITGAIPSEIGNCSGIEILELGSNSLAGRIPADLSRLTLLRVLDLSGNNLTGDVPAEISKCSGLTTLLVDHNRLSGEIPGSLWNLPNLTMLDLSANNLSGEIPSNLSMIPSLVFLNVSGNNLDGEIPPTLGSRFSYPDVFADNPGLCGKPLDTKCEDIDNGKDRKRMIVLVVVVACGAFVLVLFCCFYVFSLLRWRKRLKQGVSGEKKKSPARASSGTSGGRSSSTESGGPKLVMFNTKVTLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLQDGSLDENMFRKEAESLGKVKHRNLIVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHQSSMVHGTVKPQNVLFDADFEAHLSDFGLEKLTIATTPGEASTSASALGYISPEAVLTGEATKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPV 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00890 1231 SUPERFAMILY L domain-like 154 450 - -
Phco4g00890 1231 PRINTS Leucine-rich repeat signature 727 740 - -
Phco4g00890 1231 PRINTS Leucine-rich repeat signature 772 785 - -
Phco4g00890 1231 FunFam Piriformospora indica-insensitive protein 2 453 551 - -
Phco4g00890 1231 ProSiteProfiles Protein kinase domain profile. 939 1218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00890 1231 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 607 1212 - -
Phco4g00890 1231 Gene3D Phosphorylase Kinase; domain 1 908 1014 - -
Phco4g00890 1231 Gene3D Transferase(Phosphotransferase) domain 1 1015 1217 - -
Phco4g00890 1231 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 126 285 - -
Phco4g00890 1231 Gene3D Ribonuclease Inhibitor 264 382 IPR032675 -
Phco4g00890 1231 Gene3D Ribonuclease Inhibitor 575 850 IPR032675 -
Phco4g00890 1231 SUPERFAMILY Protein kinase-like (PK-like) 919 1219 IPR011009 -
Phco4g00890 1231 Pfam Leucine rich repeat N-terminal domain 129 166 IPR013210 -
Phco4g00890 1231 Pfam Leucine Rich Repeat 582 604 IPR001611 GO:0005515
Phco4g00890 1231 MobiDBLite consensus disorder prediction 898 919 - -
Phco4g00890 1231 FunFam Putative LRR receptor-like serine/threonine-protein kinase 902 1014 - -
Phco4g00890 1231 SUPERFAMILY L domain-like 577 837 - -
Phco4g00890 1231 Pfam Protein tyrosine and serine/threonine kinase 943 1156 IPR001245 GO:0004672|GO:0006468
Phco4g00890 1231 MobiDBLite consensus disorder prediction 893 919 - -
Phco4g00890 1231 SMART LRR_typ_2 676 700 IPR003591 -
Phco4g00890 1231 SMART LRR_typ_2 628 651 IPR003591 -
Phco4g00890 1231 SMART LRR_typ_2 192 216 IPR003591 -
Phco4g00890 1231 SMART LRR_typ_2 724 748 IPR003591 -
Phco4g00890 1231 SMART LRR_typ_2 358 382 IPR003591 -
Phco4g00890 1231 SMART LRR_typ_2 772 803 IPR003591 -
Phco4g00890 1231 SMART LRR_typ_2 436 460 IPR003591 -
Phco4g00890 1231 SMART LRR_typ_2 240 263 IPR003591 -
Phco4g00890 1231 SMART LRR_typ_2 532 556 IPR003591 -
Phco4g00890 1231 SMART LRR_typ_2 580 604 IPR003591 -
Phco4g00890 1231 SMART LRR_typ_2 508 531 IPR003591 -
Phco4g00890 1231 SMART LRR_typ_2 310 334 IPR003591 -
Phco4g00890 1231 Pfam Leucine rich repeat 678 737 IPR001611 GO:0005515
Phco4g00890 1231 Pfam Leucine rich repeat 750 809 IPR001611 GO:0005515
Phco4g00890 1231 Pfam Leucine rich repeat 510 569 IPR001611 GO:0005515
Phco4g00890 1231 Pfam Leucine rich repeat 265 323 IPR001611 GO:0005515
Phco4g00890 1231 SUPERFAMILY RNI-like 351 666 - -
Phco4g00890 1231 Gene3D Ribonuclease Inhibitor 383 574 IPR032675 -
Phco4g00890 1231 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 304 404 - -
Phco4g00890 1231 SMART LRR_sd22_2 772 795 - -
Phco4g00890 1231 SMART LRR_sd22_2 436 462 - -
Phco4g00890 1231 SMART LRR_sd22_2 310 336 - -
Phco4g00890 1231 SMART LRR_sd22_2 556 582 - -
Phco4g00890 1231 SMART LRR_sd22_2 724 753 - -
Phco4g00890 1231 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 1015 1217 - -
Phco4g00890 1231 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 554 846 - -
Phco4g00890 1231 Gene3D Ribonuclease Inhibitor 128 263 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00890 Phco-Chr4 7016261 7023398 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Phco4g00890 PK_Tyr_Ser-Thr 3.4e-32 CL0016